Mir-7385-P5b

MirGeneDB ID

Mdo-Mir-7385-P5b

Family name

MIR-7385 (all species)

Seed

AGUCUGA

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-7385g-2

Paralogues

Mdo-Mir-7385-P1a Mdo-Mir-7385-P1b Mdo-Mir-7385-P1c Mdo-Mir-7385-P2-v1 Mdo-Mir-7385-P2-v2 Mdo-Mir-7385-P3 Mdo-Mir-7385-P4 Mdo-Mir-7385-P5a Mdo-Mir-7385-P5c Mdo-Mir-7385-P6 Mdo-Mir-7385-P7 Mdo-Mir-7385-P8

Orthologues

Neu-Mir-7385-o5

Node of Origin (locus)

M. domestica

Node of Origin (family)

Marsupialia

Genome context
(monDom5_add)

X: 4614848-4614909 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-7385-P5b)

Mir-7385-P1a X: 4607962-4608023 [+] UCSC Ensembl
Mir-7385-P1b X: 4609054-4609115 [+] UCSC Ensembl
Mir-7385-P2-v1 X: 4610588-4610649 [+] UCSC Ensembl
Mir-7385-P2-v2 X: 4610588-4610649 [+] UCSC Ensembl
Mir-7385-P3 X: 4611475-4611536 [+] UCSC Ensembl
Mir-7385-P4 X: 4611934-4611995 [+] UCSC Ensembl
Mir-7385-P5a X: 4612215-4612273 [+] UCSC Ensembl
Mir-7385-P6 X: 4614575-4614633 [+] UCSC Ensembl
Mir-7385-P5b X: 4614848-4614909 [+] UCSC Ensembl
Mir-7385-P7 X: 4615421-4615479 [+] UCSC Ensembl
Mir-7385-P8 X: 4616510-4616572 [+] UCSC Ensembl
Mir-7385-P1c X: 4616788-4616846 [+] UCSC Ensembl
Mir-7385-P5c X: 4617777-4617835 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUGGCCCUCAUUUUUCUUAAGGUCUCUUCUUAGUCUGAUAUUCCAUGUUUCUAGGGUAUCAAGAGACUUGGAGCAUAGAAUGUCAGGUCUAGAAGUUACCUUAACGUAUCAGUGGAUGAUAG

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Structure

        10          20        30         40        50        60
AUGGCCCUCAUUUUUCU--|     CU     U  -          C       UAGGGUAU 
                   UAAGGU  CUUCU AG UCUGAUAUUC AUGUUUC        C
                   AUUCCA  GAAGA UC GGACUGUAAG UACGAGG        A
GAUAGUAGGUGACUAUGCA^     UU     -  U          A       UUCAGAGA 
120       110       100         90        80        70

Deep sequencing

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Comment

There is a Dicer cut -1.

3' NTU

Yes

Motifs

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Mdo-Mir-7385-P5b_5p

mirBase accession

MIMAT0050380

Sequence

0- UAGUCUGAUAUUCCAUGUUUCU -22

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Star sequence

Mdo-Mir-7385-P5b_3p*

mirBase accession

MIMAT0050492

Sequence

40- GAGCAUAGAAUGUCAGGUCUAG -62

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