Mir-7385-P3

MirGeneDB ID

Mdo-Mir-7385-P3

Family name

MIR-7385 (all species)

Seed

AACAUAG

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-7385c

Paralogues

Mdo-Mir-7385-P1a Mdo-Mir-7385-P1b Mdo-Mir-7385-P1c Mdo-Mir-7385-P2-v1 Mdo-Mir-7385-P2-v2 Mdo-Mir-7385-P4 Mdo-Mir-7385-P5a Mdo-Mir-7385-P5b Mdo-Mir-7385-P5c Mdo-Mir-7385-P6 Mdo-Mir-7385-P7 Mdo-Mir-7385-P8

Orthologues

Neu-Mir-7385-o3

Node of Origin (locus)

M. domestica

Node of Origin (family)

Marsupialia

Genome context
(monDom5_add)

X: 4611475-4611536 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-7385-P3)

Mir-7385-P1a X: 4607962-4608023 [+] UCSC Ensembl
Mir-7385-P1b X: 4609054-4609115 [+] UCSC Ensembl
Mir-7385-P2-v1 X: 4610588-4610649 [+] UCSC Ensembl
Mir-7385-P2-v2 X: 4610588-4610649 [+] UCSC Ensembl
Mir-7385-P3 X: 4611475-4611536 [+] UCSC Ensembl
Mir-7385-P4 X: 4611934-4611995 [+] UCSC Ensembl
Mir-7385-P5a X: 4612215-4612273 [+] UCSC Ensembl
Mir-7385-P6 X: 4614575-4614633 [+] UCSC Ensembl
Mir-7385-P5b X: 4614848-4614909 [+] UCSC Ensembl
Mir-7385-P7 X: 4615421-4615479 [+] UCSC Ensembl
Mir-7385-P8 X: 4616510-4616572 [+] UCSC Ensembl
Mir-7385-P1c X: 4616788-4616846 [+] UCSC Ensembl
Mir-7385-P5c X: 4617777-4617835 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAACUCAGCUUCAUAUCCAGGGUCCCAUCUAGGUCUGAUACUCUAUCUUUCAGUGAUGUUCUAAAACCUGGAACAUAGUUUGUCUGGCCUGGAAGUGUCCUUUGGCUAGGACUCUAUUGAAA

Get precursor sequence

Structure

        10          20        30        40        50        60
CAACUCAGCUUCAUAUCC--|   UCCCA        U    CU    C     GUGAUGU 
                    AGGG     UCUAGGUC GAUA  CUAU UUUCA       U
                    UUCC     AGGUCCGG CUGU  GAUA AAGGU       C
AAAGUUAUCUCAGGAUCGGU^   UGUGA        U    UU    C     CCAAAAU 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

Comment

There is a Drosha cut +3 on the 5p arm.

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Ce	He	Ki	Te

Star sequence

Mdo-Mir-7385-P3_5p* (predicted)

mirBase accession

MIMAT0028830

Sequence

0- AGGUCUGAUACUCUAUCUUUCA -22

Get sequence

Proposed targets

TargetScanVert: mdo-miR-7385c-5p

Mature sequence

Mdo-Mir-7385-P3_3p

mirBase accession

MIMAT0028831

Sequence

40- GAACAUAGUUUGUCUGGCCUGG -62

Get sequence

Proposed targets

TargetScanVert: mdo-miR-7385c-3p