MirGeneDB 3.0

MirGeneDB ID

Npo-Mir-12498

Family name MIR-12498 (all species)
Seed GGGGAUG
Species Chambered Nautilus (Nautilus pompilius)
MiRBase ID
Paralogues
Orthologues Esc-Mir-12498  Obi-Mir-12498  Ovu-Mir-12498 
Node of Origin (locus) Cephalopoda
Node of Origin (family) Cephalopoda
Genome context
(GCA_018389105_NPO)
JACATO010000106.1: 248968-249029 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CCACCCUGCUCAUACCUCUGCACCCGGUUUUGCCCUUCACAGGUAUCUCCUGGAUAGAGACUUGGACCCUGGGGAUGCUGUGAAUGGUUCUUACCGGGAGUAGUCUCUUGUCGGACACAGGA
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Structure
        10          20        30         40        50        60
CCACCCUGCUCAUACCU--    A      UUU-|  C       G       U  AUAGAG 
                   CUGC CCCGGU    GCC UUCACAG UAUCUCC GG      A
                   GAUG GGGCCA    UGG AAGUGUC GUAGGGG CC      C
AGGACACAGGCUGUUCUCU    A      UUCU^  U       -       U  CAGGUU 
120       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsNo
Star sequence

Npo-Mir-12498_5p* (predicted)

mirBase accessionNone
Sequence
0- UGCCCUUCACAGGUAUCUCCUGG -23
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Mature sequence

Npo-Mir-12498_3p (predicted)

mirBase accessionNone
Sequence
39- UGGGGAUGCUGUGAAUGGUUCUU -62
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