Mir-1421-P9

MirGeneDB ID

Oan-Mir-1421-P9

Family name

MIR-1421 (all species)

Seed

GGAGGAC

Species

Platypus (Ornithorhynchus anatinus)

MiRBase ID

oan-mir-1421ac-2

Paralogues

Oan-Mir-1421-P1 Oan-Mir-1421-P2 Oan-Mir-1421-P3 Oan-Mir-1421-P4 Oan-Mir-1421-P5 Oan-Mir-1421-P6 Oan-Mir-1421-P7a Oan-Mir-1421-P7b Oan-Mir-1421-P7c Oan-Mir-1421-P8 Oan-Mir-1421-P10 Oan-Mir-1421-P11 Oan-Mir-1421-P12 Oan-Mir-1421-P13a Oan-Mir-1421-P13b Oan-Mir-1421-P14 Oan-Mir-1421-P15 Oan-Mir-1421-P16 Oan-Mir-1421-P17 Oan-Mir-1421-P18 Oan-Mir-1421-P19 Oan-Mir-1421-P20 Oan-Mir-1421-P21 Oan-Mir-1421-P22 Oan-Mir-1421-P23 Oan-Mir-1421-P24 Oan-Mir-1421-P25 Oan-Mir-1421-P26 Oan-Mir-1421-P27 Oan-Mir-1421-P28 Oan-Mir-1421-P29a Oan-Mir-1421-P29b Oan-Mir-1421-P30 Oan-Mir-1421-P31a Oan-Mir-1421-P31b Oan-Mir-1421-P31c Oan-Mir-1421-P32 Oan-Mir-1421-P33 Oan-Mir-1421-P34 Oan-Mir-1421-P35 Oan-Mir-1421-P36a Oan-Mir-1421-P36b Oan-Mir-1421-P37 Oan-Mir-1421-P38 Oan-Mir-1421-P39 Oan-Mir-1421-P40 Oan-Mir-1421-P41 Oan-Mir-1421-P42 Oan-Mir-1421-P43 Oan-Mir-1421-P44 Oan-Mir-1421-P45 Oan-Mir-1421-P46 Oan-Mir-1421-P47 Oan-Mir-1421-P48 Oan-Mir-1421-P49 Oan-Mir-1421-P50 Oan-Mir-1421-P51 Oan-Mir-1421-P52a Oan-Mir-1421-P52b Oan-Mir-1421-P53 Oan-Mir-1421-P54

Orthologues

Node of Origin (locus)

O. anatinus

Node of Origin (family)

O. anatinus

Genome context
(mOrnAna1.p.v1_plustraces)

NC_041749.1: 96850234-96850294 [+]

Clustered miRNAs
(< 50kb from Mir-1421-P9)

Mir-1421-P33 NC_041749.1: 96800689-96800749 [+]
Mir-1421-P29b NC_041749.1: 96801390-96801450 [+]
Mir-1421-P31a NC_041749.1: 96802450-96802510 [+]
Mir-1421-P34 NC_041749.1: 96803000-96803054 [+]
Mir-1421-P35 NC_041749.1: 96803731-96803791 [+]
Mir-1421-P36b NC_041749.1: 96804289-96804349 [+]
Mir-1421-P37 NC_041749.1: 96805105-96805165 [+]
Mir-1421-P38 NC_041749.1: 96806411-96806471 [+]
Mir-1421-P39 NC_041749.1: 96808270-96808331 [+]
Mir-1419-P7 NC_041749.1: 96808674-96808732 [+]
Mir-1421-P40 NC_041749.1: 96810304-96810363 [+]
Mir-1421-P36a NC_041749.1: 96810861-96810921 [+]
Mir-1421-P41 NC_041749.1: 96811675-96811735 [+]
Mir-1421-P42 NC_041749.1: 96812547-96812607 [+]
Mir-1421-P43 NC_041749.1: 96816733-96816787 [+]
Mir-1421-P31c NC_041749.1: 96816957-96817017 [+]
Mir-1421-P44 NC_041749.1: 96819518-96819575 [+]
Mir-1421-P45 NC_041749.1: 96820252-96820312 [+]
Mir-1419-P8 NC_041749.1: 96820654-96820712 [+]
Mir-1421-P46 NC_041749.1: 96821372-96821432 [+]
Mir-1421-P47 NC_041749.1: 96822447-96822507 [+]
Mir-1421-P48 NC_041749.1: 96822927-96822987 [+]
Mir-1421-P49 NC_041749.1: 96823569-96823625 [+]
Mir-1419-P9 NC_041749.1: 96823966-96824024 [+]
Mir-1421-P50 NC_041749.1: 96824715-96824775 [+]
Mir-1421-P51 NC_041749.1: 96826285-96826341 [+]
Mir-1421-P52a NC_041749.1: 96833979-96834039 [+]
Mir-1421-P1 NC_041749.1: 96837949-96838010 [+]
Mir-1421-P2 NC_041749.1: 96840218-96840278 [+]
Mir-1419-P1 NC_041749.1: 96841505-96841558 [+]
Mir-1421-P4 NC_041749.1: 96842948-96843008 [+]
Mir-1421-P5 NC_041749.1: 96844194-96844254 [+]
Mir-1421-P6 NC_041749.1: 96844751-96844811 [+]
Mir-1421-P8 NC_041749.1: 96847806-96847866 [+]
Mir-1421-P9 NC_041749.1: 96850234-96850294 [+]
Mir-1419-P2c NC_041749.1: 96853761-96853819 [+]
Mir-1421-P7b NC_041749.1: 96855059-96855119 [+]
Mir-1421-P10 NC_041749.1: 96855616-96855676 [+]
Mir-1421-P12 NC_041749.1: 96857179-96857236 [+]
Mir-1421-P13a NC_041749.1: 96860142-96860202 [+]
Mir-1419-P3 NC_041749.1: 96860539-96860600 [+]
Mir-1419-P2b NC_041749.1: 96861885-96861943 [+]
Mir-1421-P7c NC_041749.1: 96863179-96863242 [+]
Mir-1421-P15 NC_041749.1: 96863738-96863798 [+]
Mir-1421-P13b NC_041749.1: 96864853-96864913 [+]
Mir-1421-P16 NC_041749.1: 96866978-96867038 [+]
Mir-1419-P2a NC_041749.1: 96867655-96867713 [+]
Mir-1421-P17 NC_041749.1: 96868684-96868744 [+]
Mir-1419-P4 NC_041749.1: 96871320-96871378 [+]
Mir-1421-P18 NC_041749.1: 96872639-96872699 [+]
Mir-1421-P19 NC_041749.1: 96873176-96873236 [+]
Mir-1419-P5 NC_041749.1: 96873874-96873932 [+]
Mir-1421-P21 NC_041749.1: 96875181-96875241 [+]

Precursor
(pre-Mir +30nt flank)

AGGAUCCUCACUAUUCCACGGCACUGUGUGAGGAGGACACAUGUGGUGCAGUAUGAUACUAGCAUAUGCUGCAUCAUGCGUGACCUCCCCACACCGUGUUGUGUCUCUCCAUCUGGAGGUU

Get precursor sequence

Structure

        10          20        30        40        50          
AGGAUCCUCACUAUUCC--|      U     A     A   AU          AUGAUAC 
                   ACGGCAC GUGUG GGAGG CAC  GUGGUGCAGU       \
                   UGUUGUG CACAC CCUCC GUG  UACUACGUCG       U
UUGGAGGUCUACCUCUCUG^      C     C     A   CG          UAUACGA 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Oan-Mir-1421-P9_5p

mirBase accession

MIMAT0007257

Sequence

0- AGGAGGACACAUGUGGUGCAGU -22

Get sequence

Star sequence

Oan-Mir-1421-P9_3p*

mirBase accession

MIMAT0007302

Sequence

39- UGCAUCAUGCGUGACCUCCCCA -61

Get sequence