MirGeneDB ID | Obi-Mir-12532-v3 |
Family name |
MIR-12532 (all species) |
Seed |
AUCCGCG |
Species |
California two-spot octopus (Octopus bimaculoides) |
MiRBase ID |
|
Paralogues |
Obi-Mir-12532-v1
Obi-Mir-12532-v2
|
Orthologues |
Esc-Mir-12532-v3
Ovu-Mir-12532-v3
|
Node of Origin (locus) |
Coleoidea
|
Node of Origin (family) |
Coleoidea
|
Genome context (PRJNA270931_OBI) |
KQ418194: 2426001-2426057 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCCUUUUUUAUUUAUCCAUUGCAGUUGUUAUACGAACAAGUGGCUGUCGGUUGAAUUUUACACACAUCCGCGAUCACUUGUUGUAUGAAGGCAAACGCGUGGAACUUUCGUCUGGCU
Get precursor sequence
|
Structure | 10 20 30 40 50
UCCUUUUUUAUUUAUCCA-----| AGUUG G GC U U AAUUU
UUGC UUAUAC AACAAGUG UG CGG UG \
AACG AGUAUG UUGUUCAC GC GCC AC U
UCGGUCUGCUUUCAAGGUGCGCA^ GA--- - UA - U ACACA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Obi-Mir-12532-v3_5p* |
mirBase accession | None |
Sequence |
0- UACGAACAAGUGGCUGUCGGUUGAA -25
Get sequence
|
Mature sequence |
Obi-Mir-12532-v3_3p |
mirBase accession | None |
Sequence |
34- CAUCCGCGAUCACUUGUUGUAUG -57
Get sequence
|