MirGeneDB 3.0

MirGeneDB ID

Obi-Mir-87-o6

Family name MIR-87 (all species)
Seed UGAGCAA
Species California two-spot octopus (Octopus bimaculoides)
MiRBase ID
Paralogues
Orthologues Esc-Mir-87-o6  Gsp-Mir-87  Ovu-Mir-87-o6  Sne-Mir-87 
Node of Origin (locus) Coleoidea
Node of Origin (family) Protostomia
Genome context
(PRJNA270931_OBI)
KQ425069: 58011-58071 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UAUAGAAAUGUGAAUUCUGGUCCGUCAGUCCGGCCUGAAAUUUUGACUCUGACCUCUUCAUCAAAGAAGGUGAGCAAAGUUUCAGGUGUAGUUGAUGGCCCAAAAAAUCAUCCUUUCUAUU
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Structure
        10          20        30        40        50        60 
UAUAGAAAUGUGAAUUC--|  U       UCCG             A   UG    CUUCA 
                   UGG CCGUCAG    GCCUGAAAUUUUG CUC  ACCU     U
                   ACC GGUAGUU    UGGACUUUGAAAC GAG  UGGA     C
UUAUCUUUCCUACUAAAAA^  C       GAUG             -   --    AGAAA 
 .       110       100        90        80           70
Deep sequencing
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CommentIt is not clear whether this is a descendant of the original Mir-87-P1 or -P2 gene.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Obi-Mir-87-o6_5p*

mirBase accessionNone
Sequence
0- CGGCCUGAAAUUUUGACUCUGACCU -25
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Mature sequence

Obi-Mir-87-o6_3p

mirBase accessionNone
Sequence
39- GUGAGCAAAGUUUCAGGUGUAG -61
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