MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-430-P29b

Family name MIR-430 (all species)
Seed UCGUGCA
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-430-P1  Pab-Mir-430-P2  Pab-Mir-430-P3  Pab-Mir-430-P4  Pab-Mir-430-P5  Pab-Mir-430-P6  Pab-Mir-430-P7  Pab-Mir-430-P8  Pab-Mir-430-P9a  Pab-Mir-430-P9b  Pab-Mir-430-P10  Pab-Mir-430-P11  Pab-Mir-430-P12a  Pab-Mir-430-P12b  Pab-Mir-430-P13  Pab-Mir-430-P14  Pab-Mir-430-P15  Pab-Mir-430-P16  Pab-Mir-430-P17  Pab-Mir-430-P18  Pab-Mir-430-P19  Pab-Mir-430-P20  Pab-Mir-430-P21  Pab-Mir-430-P22  Pab-Mir-430-P23  Pab-Mir-430-P24  Pab-Mir-430-P27  Pab-Mir-430-P28  Pab-Mir-430-P29a  Pab-Mir-430-P29c  Pab-Mir-430-P30  Pab-Mir-430-P31a  Pab-Mir-430-P31b  Pab-Mir-430-P32  Pab-Mir-430-P33a  Pab-Mir-430-P33b  Pab-Mir-430-P34a  Pab-Mir-430-P34b  Pab-Mir-430-P36  Pab-Mir-430-P37a  Pab-Mir-430-P37b  Pab-Mir-430-P37c  Pab-Mir-430-P38  Pab-Mir-430-P39  Pab-Mir-430-P40a  Pab-Mir-430-P40b  Pab-Mir-430-P41a  Pab-Mir-430-P41b 
Orthologues Hsa-Mir-430-P29b  Mml-Mir-430-P29b-v1  Mml-Mir-430-P29b-v2  Sha-Mir-430-o29 
Node of Origin (locus) Catarrhini
Node of Origin (family) Vertebrata
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054699.2: 60096688-60096746 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACUGGAGCAAGAAGACCUCAUGCUGUGACCCUCUAGAUGGAAGCACUGUCUGUUGUCUAAUAAAAGAUCGUGCAUCCUUUUAGAGUGUUACUGUUUGAGAAAAGCAACGUUGAAGAUG
Get precursor sequence
Structure
        10          20        30        40        50         
UACUGGAGCAAGAAGAC--|   U  U     C       U   A    U    GUUGUC 
                   CUCA GC GUGAC CUCUAGA GGA GCAC GUCU      \
                   GAGU UG CAUUG GAGAUUU CCU CGUG UAGA      U
GUAGAAGUUGCAACGAAAA^   U  U     U       U   A    C    AAAUAA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Li Li
Star sequence

Pab-Mir-430-P29b_5p*

mirBase accessionNone
Sequence
0- CCUCUAGAUGGAAGCACUGUCU -22
Get sequence
Mature sequence

Pab-Mir-430-P29b_3p

mirBase accessionNone
Sequence
37- AUCGUGCAUCCUUUUAGAGUGU -59
Get sequence