| MirGeneDB ID | Pab-Mir-770 |
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| Family name |
MIR-770 (all species) |
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| Seed |
CCAGUAC |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Cja-Mir-770
Eca-Mir-770
Hsa-Mir-770
Mml-Mir-770
Mmr-Mir-770
Mmu-Mir-770
Rno-Mir-770
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| Node of Origin (locus) |
Boreoeutheria
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| Node of Origin (family) |
Boreoeutheria
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054694.2: 105276468-105276529 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUUCAUGUGUCAGGAGCCACCUUCCGAGCCUCCAGUACCACGUGUCAGGGCCACAUGAGCUGGGCCUCGUGGGCCUGAUGUGGUGCUGGGGCCUCAGGGGUCUGCUCUUCUUCUCUUUCAGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AUUCAUGUGUCAGGAGCC---| CC C GU G AUGAGC
ACCUU GAG CUCCAGUACCAC GUCAGG CCAC U
UGGGG CUC GGGGUCGUGGUG UAGUCC GGUG G
AGACUUUCUCUUCUUCUCGUC^ A- C -- G CUCCGG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | The Drosha cut is -3 relative to the murids and Microcebus. |
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Pab-Mir-770_5p |
| mirBase accession | None |
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| Sequence |
0- UCCAGUACCACGUGUCAGGGCCACA -25
Get sequence
|
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| Star sequence |
Pab-Mir-770_3p* |
| mirBase accession | None |
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| Sequence |
39- UGGGCCUGAUGUGGUGCUGGGGC -62
Get sequence
|
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