| MirGeneDB ID | Pab-Mir-770 |
|---|---|
| Family name | MIR-770 (all species) |
| Seed | CCAGUAC |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Cja-Mir-770 Eca-Mir-770 Hsa-Mir-770 Mml-Mir-770 Mmr-Mir-770 Mmu-Mir-770 Rno-Mir-770 |
| Node of Origin (locus) | Boreoeutheria |
| Node of Origin (family) | Boreoeutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054694.2: 105276468-105276529 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AUUCAUGUGUCAGGAGCCACCUUCCGAGCCUCCAGUACCACGUGUCAGGGCCACAUGAGCUGGGCCUCGUGGGCCUGAUGUGGUGCUGGGGCCUCAGGGGUCUGCUCUUCUUCUCUUUCAGAGet precursor sequence |
| Structure | 10 20 30 40 50 60 AUUCAUGUGUCAGGAGCC---| CC C GU G AUGAGC ACCUU GAG CUCCAGUACCAC GUCAGG CCAC U UGGGG CUC GGGGUCGUGGUG UAGUCC GGUG G AGACUUUCUCUUCUUCUCGUC^ A- C -- G CUCCGG 120 110 100 90 80 70 |
| Deep sequencing | |
| Comment | The Drosha cut is -3 relative to the murids and Microcebus. |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Pab-Mir-770_5p |
| mirBase accession | None |
| Sequence |
0- UCCAGUACCACGUGUCAGGGCCACA -25
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|
| Star sequence | Pab-Mir-770_3p* |
| mirBase accession | None |
| Sequence |
39- UGGGCCUGAUGUGGUGCUGGGGC -62
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|
