MirGeneDB ID | Pfl-Mir-133-v1 |
Family name |
MIR-133 (all species) |
Seed |
UUGGUCC |
Species |
Ptychodera (Ptychodera flava) |
MiRBase ID |
|
Paralogues |
Pfl-Mir-133-v2
|
Orthologues |
Aae-Mir-133
Aga-Mir-133
Asu-Mir-133
Bfl-Mir-133-v1
Bge-Mir-133
Bla-Mir-133-v1
Cbr-Mir-133
Cel-Mir-133
Cin-Mir-133
Cte-Mir-133
Dan-Mir-133
Dgr-Mir-133
Dlo-Mir-133
Dma-Mir-133
Dme-Mir-133
Dmo-Mir-133
Dpu-Mir-133
Dsi-Mir-133
Dya-Mir-133
Eba-Mir-133
Efe-Mir-133
Egr-Mir-133
Esc-Mir-133
Gpa-Mir-133
Gsp-Mir-133
Hme-Mir-133
Hru-Mir-133
Isc-Mir-133
Lan-Mir-133
Lgi-Mir-133
Lhy-Mir-133
Llo-Mir-133
Mgi-Mir-133
Mom-Mir-133
Obi-Mir-133
Ofu-Mir-133
Ovu-Mir-133
Pau-Mir-133
Pca-Mir-133
Pcr-Mir-133
Pdu-Mir-133
Pve-Mir-133
Rph-Mir-133
Sko-Mir-133-v1
Sma-Mir-133
Snu-Mir-133
Spu-Mir-133
Tca-Mir-133
Tur-Mir-133
War-Mir-133
Xbo-Mir-133
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (Pfl) |
LD345073.1: 192531-192590 [+]
|
Precursor (pre-Mir +30nt flank) |
GUGCGCAUGGAAAGUGAGAUGCUGUGCUAAAGCUGGUAUAUCGGAACCAAAUCAUACGUAGAAUGGAUUUGGUCCCCUUCAACCAGCUGUUGCAUAGUAUUAAAUGCAUCAACUGGGUCA
Get precursor sequence
|
Structure | 10 20 30 40 50
GUGCGCAUGGAAAGUGA--| UAA AUAUC A AUACG
GAUGCUGUGC AGCUGGU GG ACCAAAUC U
UUAUGAUACG UCGACCA CC UGGUUUAG A
ACUGGGUCAACUACGUAAA^ UUG ACUUC C GUAAG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Pfl-Mir-133-v1_5p* |
mirBase accession | None |
Sequence |
0- AGCUGGUAUAUCGGAACCAAAUC -23
Get sequence
|
Mature sequence |
Pfl-Mir-133-v1_3p |
mirBase accession | None |
Sequence |
37- UUUGGUCCCCUUCAACCAGCUGU -60
Get sequence
|