MirGeneDB 3.0
MirGeneDB ID

Sko-Mir-133-v1

Family name MIR-133 (all species)
Seed UUGGUCC
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-133
Paralogues Sko-Mir-133-v2 
Orthologues Aae-Mir-133  Aga-Mir-133  Asu-Mir-133  Bfl-Mir-133-v1  Bge-Mir-133  Bla-Mir-133-v1  Cbr-Mir-133  Cel-Mir-133  Cin-Mir-133  Cte-Mir-133  Dan-Mir-133  Dgr-Mir-133  Dlo-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dpu-Mir-133  Dsi-Mir-133  Dya-Mir-133  Eba-Mir-133  Efe-Mir-133  Egr-Mir-133  Esc-Mir-133  Gpa-Mir-133  Gsp-Mir-133  Hme-Mir-133  Hru-Mir-133  Isc-Mir-133  Lan-Mir-133  Lgi-Mir-133  Lhy-Mir-133  Llo-Mir-133  Mgi-Mir-133  Mom-Mir-133  Obi-Mir-133  Ofu-Mir-133  Ovu-Mir-133  Pau-Mir-133  Pca-Mir-133  Pcr-Mir-133  Pdu-Mir-133  Pfl-Mir-133-v1  Pve-Mir-133  Rph-Mir-133  Sma-Mir-133  Snu-Mir-133  Spu-Mir-133  Tca-Mir-133  Tur-Mir-133  War-Mir-133  Xbo-Mir-133 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Skow_1.1)		 NW_003119931.1: 54109-54168 [-]
Clustered miRNAs
(< 50kb from Mir-133-v1)		 Mir-133-v1 NW_003119931.1: 54109-54168 [-]
Mir-133-v2 NW_003119931.1: 54109-54168 [-]
Precursor
(pre-Mir +30nt flank)
AUUCCAACUGCAAUUGAGAUGUGGUGCUGAAGCUGGUAAAUCGGAACCAAAUCAUAUUACAAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCAUGGCAUUCAAACCAACAUUGGCACCU
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Structure
        10          20        30        40        50         
AUUCCAACUGCAAUUGA--|    G      A       AAAUC  A        AUAUU 
                   GAUGU GUGCUG AGCUGGU     GG ACCAAAUC     A
                   UUACG UACGAU UCGACCA     CC UGGUUUAG     C
UCCACGGUUACAACCAAAC^    G      G       ACUUC  C        GUAAA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Sko-Mir-133-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGCUGGUAAAUCGGAACCAAAUC -23
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Mature sequence

Sko-Mir-133-v1_3p
mirBase accessionMIMAT0009627
Sequence 
37- UUUGGUCCCCUUCAACCAGCUGU -60
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