MirGeneDB ID | Pfl-Mir-4829-P1 |
Family name |
MIR-4829 (all species) |
Seed |
GUACUCU |
Species |
Ptychodera (Ptychodera flava) |
MiRBase ID |
|
Paralogues |
Pfl-Mir-4829-P2
Pfl-Mir-4829-P3
|
Orthologues |
Sko-Mir-4829-P1
|
Node of Origin (locus) |
Enteropneusta
|
Node of Origin (family) |
Enteropneusta
|
Genome context (Pfl) |
LD533351.1: 109641-109700 [+]
|
Precursor (pre-Mir +30nt flank) |
CACAGAGUCCAAUUGUUGUAGGGGUUGAGGCAGACAUUCGCAAGAGCACAUUUUGACACUAACAAUAAUGUACUCUUCCUAAUGCCUGGCUCACUCUCUAGCCCUUGUCAACACCUGGUU
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|
Structure | 10 20 30 40 50
CACAGAGUCCAAUUGUUG--| GU G A CGC C UUGACA
UAGGG UGAG CAG CAUU AAGAG ACAUU C
AUCUC ACUC GUC GUAA UUCUC UGUAA U
UUGGUCCACAACUGUUCCCG^ UC G C UCC A UAACAA
. 110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Star sequence |
Pfl-Mir-4829-P1_5p* |
mirBase accession | None |
Sequence |
0- CAGACAUUCGCAAGAGCACAUU -22
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|
Mature sequence |
Pfl-Mir-4829-P1_3p |
mirBase accession | None |
Sequence |
38- UGUACUCUUCCUAAUGCCUGGC -60
Get sequence
|