MirGeneDB ID | Pfl-Mir-4829-P3 |
Family name |
MIR-4829 (all species) |
Seed |
GUACUUU |
Species |
Ptychodera (Ptychodera flava) |
MiRBase ID |
|
Paralogues |
Pfl-Mir-4829-P1
Pfl-Mir-4829-P2
|
Orthologues |
Sko-Mir-4829-P3
|
Node of Origin (locus) |
Enteropneusta
|
Node of Origin (family) |
Enteropneusta
|
Genome context (Pfl) |
LD533351.1: 110032-110091 [+]
|
Precursor (pre-Mir +30nt flank) |
AUUUAUUUCCACUGUUCUAGGGGGCUGGUUCAGGUAUUGGAAAAAGCACGUUGAACUCCCUAGACAAAUGUACUUUUCCCAAUGCCGGGGCCAUCUUCUAACACAGCGUCGUCAAUGGCU
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|
Structure | 10 20 30 40 50
AUUUAUUUCCACUGUUC---| C A A C GAACUC
UAGGGGG UGGUUC GGUAUUGG AAAAG ACGUU C
AUCUUCU ACCGGG CCGUAACC UUUUC UGUAA C
UCGGUAACUGCUGCGACACA^ - G C A ACAGAU
. 110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Pfl-Mir-4829-P3_5p* |
mirBase accession | None |
Sequence |
0- CAGGUAUUGGAAAAAGCACGUU -22
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|
Mature sequence |
Pfl-Mir-4829-P3_3p |
mirBase accession | None |
Sequence |
38- UGUACUUUUCCCAAUGCCGGGG -60
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|