MirGeneDB 3.0

MirGeneDB ID

Pfl-Mir-4830-P7

Family name MIR-4830 (all species)
Seed CUCUUGA
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues Pfl-Mir-4830-P5  Pfl-Mir-4830-P6  Pfl-Mir-4830-P8 
Orthologues
Node of Origin (locus) P. flava
Node of Origin (family) Enteropneusta
Genome context
(Pfl)
LD353158.1: 289927-289988 [-]
Precursor
(pre-Mir +30nt flank)
ACAGGUAGAAAACCCCUAGGCCGGCUGGAGUCUCUUGAGAGCCAUAUGGAGGAUGUUUUCUUAACAUCUCCUCCCUAUGCUUUCAUGAGUCUUCAGUAGGUCACAUCUUCAACUUGGUUUUU
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Structure
        10          20        30        40        50        60 
ACAGGUAGAAAACCCCUA--|   G       U   U       C   U      UGUUUUC 
                    GGCC GCUGGAG CUC UGAGAGC AUA GGAGGA       \
                    CUGG UGACUUC GAG ACUUUCG UAU CCUCCU       U
UUUUUGGUUCAACUUCUACA^   A       U   U       -   C      CUACAAU 
120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
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To
Mature sequence

Pfl-Mir-4830-P7_5p

mirBase accessionNone
Sequence
0- UCUCUUGAGAGCCAUAUGGAGGA -23
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Star sequence

Pfl-Mir-4830-P7_3p* (predicted)

mirBase accessionNone
Sequence
40- CUCCCUAUGCUUUCAUGAGUCU -62
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