MirGeneDB ID | Pfl-Mir-4830-P7 |
Family name |
MIR-4830 (all species) |
Seed |
CUCUUGA |
Species |
Ptychodera (Ptychodera flava) |
MiRBase ID |
|
Paralogues |
Pfl-Mir-4830-P5
Pfl-Mir-4830-P6
Pfl-Mir-4830-P8
|
Orthologues |
|
Node of Origin (locus) |
P. flava
|
Node of Origin (family) |
Enteropneusta
|
Genome context (Pfl) |
LD353158.1: 289927-289988 [-]
|
Precursor (pre-Mir +30nt flank) |
ACAGGUAGAAAACCCCUAGGCCGGCUGGAGUCUCUUGAGAGCCAUAUGGAGGAUGUUUUCUUAACAUCUCCUCCCUAUGCUUUCAUGAGUCUUCAGUAGGUCACAUCUUCAACUUGGUUUUU
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|
Structure | 10 20 30 40 50 60
ACAGGUAGAAAACCCCUA--| G U U C U UGUUUUC
GGCC GCUGGAG CUC UGAGAGC AUA GGAGGA \
CUGG UGACUUC GAG ACUUUCG UAU CCUCCU U
UUUUUGGUUCAACUUCUACA^ A U U - C CUACAAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Pfl-Mir-4830-P7_5p |
mirBase accession | None |
Sequence |
0- UCUCUUGAGAGCCAUAUGGAGGA -23
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|
Star sequence |
Pfl-Mir-4830-P7_3p* (predicted) |
mirBase accession | None |
Sequence |
40- CUCCCUAUGCUUUCAUGAGUCU -62
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|