MirGeneDB ID | Pfl-Mir-4830-P8 |
Family name |
MIR-4830 (all species) |
Seed |
CUCUUGA |
Species |
Ptychodera (Ptychodera flava) |
MiRBase ID |
|
Paralogues |
Pfl-Mir-4830-P5
Pfl-Mir-4830-P6
Pfl-Mir-4830-P7
|
Orthologues |
|
Node of Origin (locus) |
P. flava
|
Node of Origin (family) |
Enteropneusta
|
Genome context (Pfl) |
LD353158.1: 289427-289486 [-]
|
Precursor (pre-Mir +30nt flank) |
UGGAAGAAAUAUAGCAUCAGUCAGCCAUGGUCUCUUGAGAGCCAUAUGGAGGAGUUCAUUAAUAAAUUCUCCAUGUGGUCUCAAUAGACCAUAUCUGUCUGAAGAGUCUACAGUCCGAGG
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|
Structure | 10 20 30 40 50
UGGAAGAAAUAUAGCAU--| U CC C G GUUCAU
CAG CAG AUGGUCU UUGAGA CCAUAUGGAGGA \
GUC GUC UACCAGA AACUCU GGUGUACCUCUU U
GGAGCCUGACAUCUGAGAA^ U UA U - AAAUAA
. 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Pfl-Mir-4830-P8_5p |
mirBase accession | None |
Sequence |
0- UCUCUUGAGAGCCAUAUGGAGGA -23
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|
Star sequence |
Pfl-Mir-4830-P8_3p* |
mirBase accession | None |
Sequence |
38- CUCCAUGUGGUCUCAAUAGACC -60
Get sequence
|