MirGeneDB 3.0

MirGeneDB ID

Pfl-Mir-4830-P8

Family name MIR-4830 (all species)
Seed CUCUUGA
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues Pfl-Mir-4830-P5  Pfl-Mir-4830-P6  Pfl-Mir-4830-P7 
Orthologues
Node of Origin (locus) P. flava
Node of Origin (family) Enteropneusta
Genome context
(Pfl)
LD353158.1: 289427-289486 [-]
Precursor
(pre-Mir +30nt flank)
UGGAAGAAAUAUAGCAUCAGUCAGCCAUGGUCUCUUGAGAGCCAUAUGGAGGAGUUCAUUAAUAAAUUCUCCAUGUGGUCUCAAUAGACCAUAUCUGUCUGAAGAGUCUACAGUCCGAGG
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Structure
        10          20        30        40        50          
UGGAAGAAAUAUAGCAU--|  U   CC       C      G            GUUCAU 
                   CAG CAG  AUGGUCU UUGAGA CCAUAUGGAGGA      \
                   GUC GUC  UACCAGA AACUCU GGUGUACCUCUU      U
GGAGCCUGACAUCUGAGAA^  U   UA       U      -            AAAUAA 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Pfl-Mir-4830-P8_5p

mirBase accessionNone
Sequence
0- UCUCUUGAGAGCCAUAUGGAGGA -23
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Star sequence

Pfl-Mir-4830-P8_3p*

mirBase accessionNone
Sequence
38- CUCCAUGUGGUCUCAAUAGACC -60
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