| MirGeneDB ID | Pma-Mir-15-P1o1 |
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| Family name |
MIR-15 (all species) |
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| Seed |
AGCAGCA |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
pma-mir-15a
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| Paralogues |
Pma-Mir-15-P1o2
Pma-Mir-15-P1o3
Pma-Mir-15-P2o1
Pma-Mir-15-P2o4
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| Orthologues |
Cin-Mir-15-P1
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| Node of Origin (locus) |
P. marinus
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| Node of Origin (family) |
Olfactores
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046123.1: 1714265-1714327 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAGAUGGAAAUGACUGGCCUCGUGGAGCUGUAGCAGCACGUAAUGGUUUGUAUUUGGGAUGUCAGGAGUUACAGACCAUGCUGUGCUGCCGCAGUGGCACGAGGAGAAGCGCACUCUCACUGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AAGAUGGAAAUGACUGG--| GA UA UA UUUGGGAU
CCUCGUG GCUG GCAGCACG AUGGUUUGUA \
GGAGCAC UGAC CGUCGUGU UACCAGACAU G
CGUCACUCUCACGCGAAGA^ GG GC CG UGAGGACU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| Comment | There is a 1 nt snp between this precursor sequence (which is in the trace archive and supported by the read data) and the assembled sequence. |
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Mature sequence |
Pma-Mir-15-P1o1_5p |
| mirBase accession | MIMAT0019379 |
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| Sequence |
0- UAGCAGCACGUAAUGGUUUGUA -22
Get sequence
|
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| Star sequence |
Pma-Mir-15-P1o1_3p* |
| mirBase accession | None |
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| Sequence |
41- CAGACCAUGCUGUGCUGCCGCA -63
Get sequence
|
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