| MirGeneDB ID | Pma-Mir-15-P2o4 |
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| Family name |
MIR-15 (all species) |
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| Seed |
AGCAGCA |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
pma-mir-16
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| Paralogues |
Pma-Mir-15-P1o1
Pma-Mir-15-P1o2
Pma-Mir-15-P1o3
Pma-Mir-15-P2o1
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| Orthologues |
Cin-Mir-15-P2
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| Node of Origin (locus) |
P. marinus
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| Node of Origin (family) |
Olfactores
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046089.1: 3364264-3364322 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CCCCCCACCCCCAUCGUCUCCCCUGCACCGUAGCAGCACGUAAAUAUUGGAGUGUGAACUCUGCGAUUCCAGUAUUUCGUGCUGCUGCUGUGCGGUGGGGAGCAUGCAGCAGCAGCAGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CCCCCCACCCCCAUCGUC- -| C U GUGAA
UCCC CUGCAC GUAGCAGCACG AAAUAUUGGAGU C
GGGG GGCGUG CGUCGUCGUGC UUUAUGACCUUA U
CGACGACGACGACGUACGA U^ U - GCGUC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Mature sequence |
Pma-Mir-15-P2o4_5p |
| mirBase accession | MIMAT0019381 |
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| Sequence |
0- UAGCAGCACGUAAAUAUUGGAGU -23
Get sequence
|
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| Star sequence |
Pma-Mir-15-P2o4_3p* |
| mirBase accession | MIMAT0019382 |
|---|
| Sequence |
37- UCCAGUAUUUCGUGCUGCUGCU -59
Get sequence
|
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