| MirGeneDB ID | Pma-Mir-15-P1o2 |
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| Family name |
MIR-15 (all species) |
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| Seed |
AGCAGCA |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
pma-mir-15b
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| Paralogues |
Pma-Mir-15-P1o1
Pma-Mir-15-P1o3
Pma-Mir-15-P2o1
Pma-Mir-15-P2o4
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| Orthologues |
Cin-Mir-15-P1
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| Node of Origin (locus) |
P. marinus
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| Node of Origin (family) |
Olfactores
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NW_022638143.1: 26054-26110 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUGGCACAGGUGGGGAGGCCCUUGGCGCCGUAGCAGCACAUCAUGGAUUGCGGGUGUUGUAGAUGCAAGCCAUGCUGUGCGGCCUUGGUGCCAGGGAGCGCUAGCAACUGGUGAAAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUGGCACAGGUGGGGAG- -| UA A U A GGUGU
GC CCUUGGCGCCG GC GCACA CAUGG UUGCG \
CG GGGACCGUGGU CG CGUGU GUACC AACGU U
UAAAGUGGUCAACGAUCG A^ UC G C G AGAUG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Mature sequence |
Pma-Mir-15-P1o2_5p |
| mirBase accession | MIMAT0019380 |
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| Sequence |
0- UAGCAGCACAUCAUGGAUUGCG -22
Get sequence
|
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| Star sequence |
Pma-Mir-15-P1o2_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
35- CAAGCCAUGCUGUGCGGCCUUG -57
Get sequence
|
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