| MirGeneDB ID | Pma-Mir-15-P2o1 |
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| Family name |
MIR-15 (all species) |
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| Seed |
AGCAGCA |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
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| Paralogues |
Pma-Mir-15-P1o1
Pma-Mir-15-P1o2
Pma-Mir-15-P1o3
Pma-Mir-15-P2o4
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| Orthologues |
Cin-Mir-15-P2
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| Node of Origin (locus) |
P. marinus
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| Node of Origin (family) |
Olfactores
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046123.1: 1713872-1713934 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCUCAAAGUAACAUACUGCCUUUCCUGCUGUAGCAGCACGUAAAUAUUGGCGUGGGCACUUGCUGAAACCUCCAAUGUUAGCUUGCUGCUGCAGUUUGAUUGGCCCUUUCUCCGGACCCGAAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UCUCAAAGUAACAUACU--| UU CU C A CGUGGGCACU
GCC UC GCUGUAGCAGCA GU AAUAUUGG \
CGG AG UGACGUCGUCGU CG UUGUAACC U
AAAGCCCAGGCCUCUUUCC^ UU UU U A UCCAAAGUCG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Mature sequence |
Pma-Mir-15-P2o1_5p |
| mirBase accession | None |
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| Sequence |
0- UAGCAGCACGUAAAUAUUGGCG -22
Get sequence
|
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| Star sequence |
Pma-Mir-15-P2o1_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
41- CCAAUGUUAGCUUGCUGCUGCA -63
Get sequence
|
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