MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-15-P2

Family name MIR-15 (all species)
Seed AGCAGCA
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4059
Paralogues Cin-Mir-15-P1 
Orthologues Aca-Mir-15-P2b  Aca-Mir-15-P2c  Aca-Mir-15-P2d  Ami-Mir-15-P2a  Ami-Mir-15-P2b  Ami-Mir-15-P2c  Ami-Mir-15-P2d  Bta-Mir-15-P2a  Bta-Mir-15-P2b  Bta-Mir-15-P2c  Bta-Mir-15-P2d  Cfa-Mir-15-P2a  Cfa-Mir-15-P2b  Cfa-Mir-15-P2c  Cfa-Mir-15-P2d  Cja-Mir-15-P2a  Cja-Mir-15-P2b  Cja-Mir-15-P2c  Cja-Mir-15-P2d  Cli-Mir-15-P2a  Cli-Mir-15-P2b  Cli-Mir-15-P2c  Cmi-Mir-15-P2a  Cmi-Mir-15-P2b  Cmi-Mir-15-P2c  Cpi-Mir-15-P2a  Cpi-Mir-15-P2b  Cpi-Mir-15-P2c  Cpo-Mir-15-P2a  Cpo-Mir-15-P2b  Cpo-Mir-15-P2c  Cpo-Mir-15-P2d  Dno-Mir-15-P2a  Dno-Mir-15-P2b  Dno-Mir-15-P2c  Dno-Mir-15-P2d  Dre-Mir-15-P2a1  Dre-Mir-15-P2a2  Dre-Mir-15-P2b  Dre-Mir-15-P2c-v1  Dre-Mir-15-P2c-v2  Dre-Mir-15-P2d  Ebu-Mir-15-P2f  Eca-Mir-15-P2a  Eca-Mir-15-P2b  Eca-Mir-15-P2c  Eca-Mir-15-P2d  Ete-Mir-15-P2a  Ete-Mir-15-P2b  Ete-Mir-15-P2c  Ete-Mir-15-P2d  Gga-Mir-15-P2a  Gga-Mir-15-P2b  Gga-Mir-15-P2c  Gja-Mir-15-P2a  Gja-Mir-15-P2b  Gja-Mir-15-P2c  Gja-Mir-15-P2d  Gmo-Mir-15-P2a2  Gmo-Mir-15-P2b  Hsa-Mir-15-P2a  Hsa-Mir-15-P2b  Hsa-Mir-15-P2c  Hsa-Mir-15-P2d  Laf-Mir-15-P2a  Laf-Mir-15-P2b  Laf-Mir-15-P2c  Laf-Mir-15-P2d  Lch-Mir-15-P2a  Lch-Mir-15-P2b  Lch-Mir-15-P2c  Loc-Mir-15-P2a  Loc-Mir-15-P2b  Loc-Mir-15-P2c  Loc-Mir-15-P2d  Mal-Mir-15-P2a2  Mal-Mir-15-P2b  Mal-Mir-15-P2d  Mdo-Mir-15-P2a  Mdo-Mir-15-P2b  Mdo-Mir-15-P2c-v1  Mdo-Mir-15-P2c-v2  Mdo-Mir-15-P2d  Mml-Mir-15-P2a  Mml-Mir-15-P2b  Mml-Mir-15-P2c  Mml-Mir-15-P2d  Mmr-Mir-15-P2a  Mmr-Mir-15-P2b  Mmr-Mir-15-P2c  Mmr-Mir-15-P2d  Mmu-Mir-15-P2a  Mmu-Mir-15-P2b  Mmu-Mir-15-P2c  Mmu-Mir-15-P2d  Mun-Mir-15-P2a  Mun-Mir-15-P2b  Mun-Mir-15-P2c  Neu-Mir-15-P2a  Neu-Mir-15-P2b  Neu-Mir-15-P2c-v1  Neu-Mir-15-P2c-v2  Neu-Mir-15-P2d  Oan-Mir-15-P2a  Oan-Mir-15-P2b  Oan-Mir-15-P2c  Oan-Mir-15-P2d  Ocu-Mir-15-P2a  Ocu-Mir-15-P2b  Ocu-Mir-15-P2c  Ocu-Mir-15-P2d  Pab-Mir-15-P2a  Pab-Mir-15-P2b  Pab-Mir-15-P2c  Pab-Mir-15-P2d  Pbv-Mir-15-P2a  Pbv-Mir-15-P2b  Pbv-Mir-15-P2c  Pma-Mir-15-P2o1  Pma-Mir-15-P2o4  Rno-Mir-15-P2a  Rno-Mir-15-P2b  Rno-Mir-15-P2c3  Rno-Mir-15-P2c4  Rno-Mir-15-P2d  Sha-Mir-15-P2a  Sha-Mir-15-P2b  Sha-Mir-15-P2c-v1  Sha-Mir-15-P2c-v2  Sha-Mir-15-P2d  Spt-Mir-15-P2a  Spt-Mir-15-P2b  Spt-Mir-15-P2c  Sto-Mir-15-P2a  Sto-Mir-15-P2b  Sto-Mir-15-P2d  Tgu-Mir-15-P2a  Tgu-Mir-15-P2b  Tgu-Mir-15-P2c  Tni-Mir-15-P2a2  Tni-Mir-15-P2b  Xla-Mir-15-P2a3  Xla-Mir-15-P2a4  Xla-Mir-15-P2b1  Xla-Mir-15-P2b2  Xla-Mir-15-P2c1  Xla-Mir-15-P2c2  Xtr-Mir-15-P2a  Xtr-Mir-15-P2b  Xtr-Mir-15-P2c 
Node of Origin (locus) Olfactores
Node of Origin (family) Olfactores
Genome context
(ci3)		 7: 3345089-3345142 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2)		 Mir-15-P2 7: 3345089-3345142 [-] UCSC Ensembl
Mir-15-P1 7: 3345446-3345500 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUAUUUAAAUACUACUUGCGAUGCGGGUUUAGCAGCAAAGACAGUAUUGGAAUAUUUGCUUCAAUGCUGCACUUGCUGCUCUACCUGUAUGGUAACUUACACCCUUUUCUAUA
Get precursor sequence
Structure
        10          20        30        40        50      
CAUAUUUAAAUACUACU--|  G        UU        AGA          AUA 
                   UGC AUGCGGGU  AGCAGCAA   CAGUAUUGGA   U
                   AUG UAUGUCCA  UCGUCGUU   GUCGUAACUU   U
AUAUCUUUUCCCACAUUCA^  G        UC        CAC          CGU 
  110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-15-P2_5p
mirBase accessionMIMAT0016606
Sequence 
0- UAGCAGCAAAGACAGUAUUGGA -22
Get sequence
Star sequence

Cin-Mir-15-P2_3p*
mirBase accessionMIMAT0016607
Sequence 
32- CAAUGCUGCACUUGCUGCUCUA -54
Get sequence