MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-15-P2d

Family name MIR-15 (all species)
Seed AGCAGCA
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-15-P1a  Sto-Mir-15-P1b  Sto-Mir-15-P1d  Sto-Mir-15-P2a  Sto-Mir-15-P2b 
Orthologues Aca-Mir-15-P2d  Ami-Mir-15-P2d  Bta-Mir-15-P2d  Cfa-Mir-15-P2d  Cin-Mir-15-P2  Cja-Mir-15-P2d  Cpo-Mir-15-P2d  Dno-Mir-15-P2d  Dre-Mir-15-P2d  Eca-Mir-15-P2d  Ete-Mir-15-P2d  Gja-Mir-15-P2d  Hsa-Mir-15-P2d  Laf-Mir-15-P2d  Loc-Mir-15-P2d  Mal-Mir-15-P2d  Mdo-Mir-15-P2d  Mml-Mir-15-P2d  Mmr-Mir-15-P2d  Mmu-Mir-15-P2d  Neu-Mir-15-P2d  Oan-Mir-15-P2d  Ocu-Mir-15-P2d  Pab-Mir-15-P2d  Rno-Mir-15-P2d  Sha-Mir-15-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_003427355_STO_add)		 BFAA01004470.1: 249794-249856 [+]
Precursor
(pre-Mir +30nt flank)
AGGGAAUGGAGCACACUGUUGACUCUACUUUAGCAGCACAUAAAUAUUGGCAGGUUCCAAUCCUGUCUUGCCAAUAUUGCGUGUGCUGCUACAAUAUAGCUCGACGCUUGCAGCAAAUCGCAG
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Structure
        10         20         30        40         50        60
AGGGAAUGGAGCACACU-     -  C  CUU           A-|         GGUUCCA 
                  GUUGA CU UA   UAGCAGCACAU  AAUAUUGGCA       A
                  CAGCU GA AU   AUCGUCGUGUG  UUAUAACCGU       U
GACGCUAAACGACGUUCG     C  U  AAC           CG^         UCUGUCC 
 120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on the 3p arm.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Sto-Mir-15-P2d_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACAUAAAUAUUGGCA -22
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Star sequence

Sto-Mir-15-P2d_3p*
mirBase accessionNone
Sequence 
40- CCAAUAUUGCGUGUGCUGCUACA -63
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