| MirGeneDB ID | Cja-Mir-15-P2d |
|---|---|
| Family name | MIR-15 (all species) |
| Seed | AGCAGCA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-15-P1a Cja-Mir-15-P1b Cja-Mir-15-P1c Cja-Mir-15-P1d Cja-Mir-15-P2a Cja-Mir-15-P2b Cja-Mir-15-P2c |
| Orthologues | Aca-Mir-15-P2d Ami-Mir-15-P2d Bta-Mir-15-P2d Cfa-Mir-15-P2d Cin-Mir-15-P2 Cpo-Mir-15-P2d Dno-Mir-15-P2d Dre-Mir-15-P2d Eca-Mir-15-P2d Ete-Mir-15-P2d Gja-Mir-15-P2d Hsa-Mir-15-P2d Laf-Mir-15-P2d Loc-Mir-15-P2d Mal-Mir-15-P2d Mdo-Mir-15-P2d Mml-Mir-15-P2d Mmr-Mir-15-P2d Mmu-Mir-15-P2d Neu-Mir-15-P2d Oan-Mir-15-P2d Ocu-Mir-15-P2d Pab-Mir-15-P2d Rno-Mir-15-P2d Sha-Mir-15-P2d Sto-Mir-15-P2d |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Olfactores |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021919.1: 69655520-69655580 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UUUGUUGCCCACACCCAGCUUCCCUGGCUCUAGCAGCACAGAAAUAUUGGCACAAGGAAGCAAGUCUGCCAAUAUUGGCUGUGCUGCUGCAGGCAGGGUGGCAAGAGCAACUGAGGAGGGGGet precursor sequence |
| Structure | 10 20 30 40 50 UUUGUUGCCCACACCCA-- U G C A-| CAAGGA GCU CCCUG CU UAGCAGCACAG AAUAUUGGCA A CGG GGGAC GA GUCGUCGUGUC UUAUAACCGU G GGGGAGGAGUCAACGAGAA U G C GG^ CUGAAC . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-15-P2d_5p |
| mirBase accession | None |
| Sequence |
0- UAGCAGCACAGAAAUAUUGGCA -22
Get sequence
|
| Star sequence | Cja-Mir-15-P2d_3p* |
| mirBase accession | None |
| Sequence |
38- CCAAUAUUGGCUGUGCUGCUGCA -61
Get sequence
|
