MirGeneDB ID | Cja-Mir-15-P2d |
Family name |
MIR-15 (all species) |
Seed |
AGCAGCA |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
Cja-Mir-15-P1a
Cja-Mir-15-P1b
Cja-Mir-15-P1c
Cja-Mir-15-P1d
Cja-Mir-15-P2a
Cja-Mir-15-P2b
Cja-Mir-15-P2c
|
Orthologues |
Aca-Mir-15-P2d
Ami-Mir-15-P2d
Bta-Mir-15-P2d
Cfa-Mir-15-P2d
Cin-Mir-15-P2
Cpo-Mir-15-P2d
Dno-Mir-15-P2d
Dre-Mir-15-P2d
Eca-Mir-15-P2d
Ete-Mir-15-P2d
Gja-Mir-15-P2d
Hsa-Mir-15-P2d
Laf-Mir-15-P2d
Loc-Mir-15-P2d
Mal-Mir-15-P2d
Mdo-Mir-15-P2d
Mml-Mir-15-P2d
Mmr-Mir-15-P2d
Mmu-Mir-15-P2d
Neu-Mir-15-P2d
Oan-Mir-15-P2d
Ocu-Mir-15-P2d
Pab-Mir-15-P2d
Rno-Mir-15-P2d
Sha-Mir-15-P2d
Sto-Mir-15-P2d
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Olfactores
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021919.1: 69655520-69655580 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUGUUGCCCACACCCAGCUUCCCUGGCUCUAGCAGCACAGAAAUAUUGGCACAAGGAAGCAAGUCUGCCAAUAUUGGCUGUGCUGCUGCAGGCAGGGUGGCAAGAGCAACUGAGGAGGGG
Get precursor sequence
|
Structure | 10 20 30 40 50
UUUGUUGCCCACACCCA-- U G C A-| CAAGGA
GCU CCCUG CU UAGCAGCACAG AAUAUUGGCA A
CGG GGGAC GA GUCGUCGUGUC UUAUAACCGU G
GGGGAGGAGUCAACGAGAA U G C GG^ CUGAAC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Cja-Mir-15-P2d_5p |
mirBase accession | None |
Sequence |
0- UAGCAGCACAGAAAUAUUGGCA -22
Get sequence
|
Star sequence |
Cja-Mir-15-P2d_3p* |
mirBase accession | None |
Sequence |
38- CCAAUAUUGGCUGUGCUGCUGCA -61
Get sequence
|