MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-15-P2b

Family name MIR-15 (all species)
Seed AGCAGCA
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-15-P1a  Cja-Mir-15-P1b  Cja-Mir-15-P1c  Cja-Mir-15-P1d  Cja-Mir-15-P2a  Cja-Mir-15-P2c  Cja-Mir-15-P2d 
Orthologues Aca-Mir-15-P2b  Ami-Mir-15-P2b  Bta-Mir-15-P2b  Cfa-Mir-15-P2b  Cin-Mir-15-P2  Cli-Mir-15-P2b  Cmi-Mir-15-P2b  Cpi-Mir-15-P2b  Cpo-Mir-15-P2b  Dno-Mir-15-P2b  Dre-Mir-15-P2b  Eca-Mir-15-P2b  Ete-Mir-15-P2b  Gga-Mir-15-P2b  Gja-Mir-15-P2b  Gmo-Mir-15-P2b  Hsa-Mir-15-P2b  Laf-Mir-15-P2b  Lch-Mir-15-P2b  Loc-Mir-15-P2b  Mal-Mir-15-P2b  Mdo-Mir-15-P2b  Mml-Mir-15-P2b  Mmr-Mir-15-P2b  Mmu-Mir-15-P2b  Mun-Mir-15-P2b  Neu-Mir-15-P2b  Oan-Mir-15-P2b  Ocu-Mir-15-P2b  Pab-Mir-15-P2b  Pbv-Mir-15-P2b  Rno-Mir-15-P2b  Sha-Mir-15-P2b  Spt-Mir-15-P2b  Sto-Mir-15-P2b  Tgu-Mir-15-P2b  Tni-Mir-15-P2b  Xla-Mir-15-P2b1  Xla-Mir-15-P2b2  Xtr-Mir-15-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021931.1: 17950682-17950746 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCGAUGAACUGACAUUCUUGUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGACAGGGAUAUAGCAACUAUUUAUCA
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Structure
        10          20        30         40        50        60  
UUUCGAUGAACUGACAU--      UC    CU        -|   A      C  AGUGAAAU 
                   UCUUGU  CACU  AGCAGCAC GUAA UAUUGG GU        \
                   GGGACA  GUGA  UCGUCGUG CAUU AUAACC CA        A
ACUAUUUAUCAACGAUAUA      GU    UU        U^   -      A  AAUUAUAU 
   120       110       100        90        80         70
Deep sequencing
3' NTU No
MotifsCNNC at 3p(+17)
Mature sequence

Cja-Mir-15-P2b_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACGUAAAUAUUGGCGU -23
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Star sequence

Cja-Mir-15-P2b_3p*
mirBase accessionNone
Sequence 
42- ACCAAUAUUACUGUGCUGCUUUA -65
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