| MirGeneDB ID | Cja-Mir-15-P2c |
|---|---|
| Family name | MIR-15 (all species) |
| Seed | AGCAGCG |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-15-P1a Cja-Mir-15-P1b Cja-Mir-15-P1c Cja-Mir-15-P1d Cja-Mir-15-P2a Cja-Mir-15-P2b Cja-Mir-15-P2d |
| Orthologues | Aca-Mir-15-P2c Ami-Mir-15-P2c Bta-Mir-15-P2c Cfa-Mir-15-P2c Cin-Mir-15-P2 Cli-Mir-15-P2c Cmi-Mir-15-P2c Cpi-Mir-15-P2c Cpo-Mir-15-P2c Dno-Mir-15-P2c Dre-Mir-15-P2c-v1 Dre-Mir-15-P2c-v2 Eca-Mir-15-P2c Ete-Mir-15-P2c Gga-Mir-15-P2c Gja-Mir-15-P2c Hsa-Mir-15-P2c Laf-Mir-15-P2c Lch-Mir-15-P2c Loc-Mir-15-P2c Mdo-Mir-15-P2c-v1 Mdo-Mir-15-P2c-v2 Mml-Mir-15-P2c Mmr-Mir-15-P2c Mmu-Mir-15-P2c Mun-Mir-15-P2c Neu-Mir-15-P2c-v1 Neu-Mir-15-P2c-v2 Oan-Mir-15-P2c Ocu-Mir-15-P2c Pab-Mir-15-P2c Pbv-Mir-15-P2c Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Sha-Mir-15-P2c-v1 Sha-Mir-15-P2c-v2 Spt-Mir-15-P2c Tgu-Mir-15-P2c Xla-Mir-15-P2c1 Xla-Mir-15-P2c2 Xtr-Mir-15-P2c |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Olfactores |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 126008473-126008535 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GGGAGGCCGUGCCCGUGCUCAGCCGUGCUCUAGCAGCGAAAACAGUUCUGCAGUUAGCUAUCAAUACUCUGGAGUAUUGUUUCCGCUGCCAGAGUAAGUCUGGGACUGCCUUGAGGGCCUACCGet precursor sequence |
| Structure | 10 20 30 40 50 60 GGGAGGCCGUGCCCGUG--| CCG A A U G UUAGCUA CUCAG UGCUCU GCAGCG AAACAGU CU CAG \ GGGUC AUGAGA CGUCGC UUUGUUA GA GUC U CCAUCCGGGAGUUCCGUCA^ UGA C C U G UCAUAAC 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Mature sequence | Cja-Mir-15-P2c_5p |
| mirBase accession | None |
| Sequence |
0- UAGCAGCGAAAACAGUUCUGCAG -23
Get sequence
|
| Star sequence | Cja-Mir-15-P2c_3p* |
| mirBase accession | None |
| Sequence |
40- GGAGUAUUGUUUCCGCUGCCAGA -63
Get sequence
|
