Mir-15-P2c

MirGeneDB ID

Cja-Mir-15-P2c

Family name

MIR-15 (all species)

Seed

AGCAGCG

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-15-P1a Cja-Mir-15-P1b Cja-Mir-15-P1c Cja-Mir-15-P1d Cja-Mir-15-P2a Cja-Mir-15-P2b Cja-Mir-15-P2d

Orthologues

Aca-Mir-15-P2c Ami-Mir-15-P2c Bta-Mir-15-P2c Cfa-Mir-15-P2c Cin-Mir-15-P2 Cli-Mir-15-P2c Cmi-Mir-15-P2c Cpi-Mir-15-P2c Cpo-Mir-15-P2c Dno-Mir-15-P2c Dre-Mir-15-P2c-v1 Dre-Mir-15-P2c-v2 Eca-Mir-15-P2c Ete-Mir-15-P2c Gga-Mir-15-P2c Gja-Mir-15-P2c Hsa-Mir-15-P2c Laf-Mir-15-P2c Lch-Mir-15-P2c Loc-Mir-15-P2c Mdo-Mir-15-P2c-v1 Mdo-Mir-15-P2c-v2 Mml-Mir-15-P2c Mmr-Mir-15-P2c Mmu-Mir-15-P2c Mun-Mir-15-P2c Neu-Mir-15-P2c-v1 Neu-Mir-15-P2c-v2 Oan-Mir-15-P2c Ocu-Mir-15-P2c Pab-Mir-15-P2c Pbv-Mir-15-P2c Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Sha-Mir-15-P2c-v1 Sha-Mir-15-P2c-v2 Spt-Mir-15-P2c Tgu-Mir-15-P2c Xla-Mir-15-P2c1 Xla-Mir-15-P2c2 Xtr-Mir-15-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021937.1: 126008473-126008535 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGAGGCCGUGCCCGUGCUCAGCCGUGCUCUAGCAGCGAAAACAGUUCUGCAGUUAGCUAUCAAUACUCUGGAGUAUUGUUUCCGCUGCCAGAGUAAGUCUGGGACUGCCUUGAGGGCCUACC

Get precursor sequence

Structure

        10          20        30        40        50        60 
GGGAGGCCGUGCCCGUG--|    CCG      A      A       U  G   UUAGCUA 
                   CUCAG   UGCUCU GCAGCG AAACAGU CU CAG       \
                   GGGUC   AUGAGA CGUCGC UUUGUUA GA GUC       U
CCAUCCGGGAGUUCCGUCA^    UGA      C      C       U  G   UCAUAAC 
 120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

Tissue expression

To

Mature sequence

Cja-Mir-15-P2c_5p

mirBase accession

None

Sequence

0- UAGCAGCGAAAACAGUUCUGCAG -23

Get sequence

Star sequence

Cja-Mir-15-P2c_3p*

mirBase accession

None

Sequence

40- GGAGUAUUGUUUCCGCUGCCAGA -63

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