Mir-15-P2c

MirGeneDB ID

Cmi-Mir-15-P2c

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-15-P1a Cmi-Mir-15-P1b Cmi-Mir-15-P1c Cmi-Mir-15-P2a Cmi-Mir-15-P2b

Orthologues

Aca-Mir-15-P2c Ami-Mir-15-P2c Bta-Mir-15-P2c Cfa-Mir-15-P2c Cin-Mir-15-P2 Cja-Mir-15-P2c Cli-Mir-15-P2c Cpi-Mir-15-P2c Cpo-Mir-15-P2c Dno-Mir-15-P2c Dre-Mir-15-P2c-v1 Dre-Mir-15-P2c-v2 Eca-Mir-15-P2c Ete-Mir-15-P2c Gga-Mir-15-P2c Gja-Mir-15-P2c Hsa-Mir-15-P2c Laf-Mir-15-P2c Lch-Mir-15-P2c Loc-Mir-15-P2c Mdo-Mir-15-P2c-v1 Mdo-Mir-15-P2c-v2 Mml-Mir-15-P2c Mmr-Mir-15-P2c Mmu-Mir-15-P2c Mun-Mir-15-P2c Neu-Mir-15-P2c-v1 Neu-Mir-15-P2c-v2 Oan-Mir-15-P2c Ocu-Mir-15-P2c Pab-Mir-15-P2c Pbv-Mir-15-P2c Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Sha-Mir-15-P2c-v1 Sha-Mir-15-P2c-v2 Spt-Mir-15-P2c Tgu-Mir-15-P2c Xla-Mir-15-P2c1 Xla-Mir-15-P2c2 Xtr-Mir-15-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635856.1: 9695185-9695246 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUUCCUGCGGUCGCUCUGUCGGCAACGCUUUAGCAGCACGUAAAUACUGGAGUUGAGAUCCCUGUGUCUCCAGUAUUGCCAAUGCUGCUCUAGUGAGGCCGACGCUCAUCUCCAGCACCUCC

Get precursor sequence

Structure

        10          20        30        40         50          
AUUCCUGCGGUCGCUCU--      AA    UU       CGUA-|         UUGAGAU 
                   GUCGGC  CGCU  AGCAGCA     AAUACUGGAG       \
                   CAGCCG  GUGA  UCGUCGU     UUAUGACCUC       C
CCUCCACGACCUCUACUCG      GA    UC       AACCG^         UGUGUCC 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-15-P2c_5p

mirBase accession

None

Sequence

0- UAGCAGCACGUAAAUACUGGAG -22

Get sequence

Star sequence

Cmi-Mir-15-P2c_3p*

mirBase accession

None

Sequence

39- CCAGUAUUGCCAAUGCUGCUCUA -62

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