MirGeneDB ID | Cmi-Mir-15-P1a |
Family name |
MIR-15 (all species) |
Seed |
AGCAGCA |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
|
Paralogues |
Cmi-Mir-15-P1b
Cmi-Mir-15-P1c
Cmi-Mir-15-P2a
Cmi-Mir-15-P2b
Cmi-Mir-15-P2c
|
Orthologues |
Ami-Mir-15-P1a
Bta-Mir-15-P1a
Cfa-Mir-15-P1a
Cin-Mir-15-P1
Cja-Mir-15-P1a
Cli-Mir-15-P1a
Cpi-Mir-15-P1a
Cpo-Mir-15-P1a
Dno-Mir-15-P1a
Dre-Mir-15-P1a1
Dre-Mir-15-P1a2
Eca-Mir-15-P1a
Ete-Mir-15-P1a
Gga-Mir-15-P1a
Gja-Mir-15-P1a
Gmo-Mir-15-P1a2
Hsa-Mir-15-P1a
Laf-Mir-15-P1a
Lch-Mir-15-P1a
Loc-Mir-15-P1a
Mal-Mir-15-P1a2
Mdo-Mir-15-P1a
Mml-Mir-15-P1a
Mmr-Mir-15-P1a
Mmu-Mir-15-P1a
Mun-Mir-15-P1a
Neu-Mir-15-P1a
Oan-Mir-15-P1a
Ocu-Mir-15-P1a
Pab-Mir-15-P1a
Rno-Mir-15-P1a
Sha-Mir-15-P1a
Spt-Mir-15-P1a
Sto-Mir-15-P1a
Tgu-Mir-15-P1a
Tni-Mir-15-P1a2
Xla-Mir-15-P1a3
Xla-Mir-15-P1a4
Xtr-Mir-15-P1a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Olfactores
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI636198.1: 77762-77820 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUAUCCAACUGUGAAGACUUUGUGGUGAUGUAGCAGCACAUAAUGGUUUGUGAGUUGUAUGGAGAUACAGGCCAUGUUGUGCUGCCAUAUGAACACAAGAGUUUAAUCUGUUUAUUUCC
Get precursor sequence
|
Structure | 10 20 30 40 50
UUAUCCAACUGUGAAGAC--| GUG A UA AGUUGU
UUUGUG AUGU GCAGCACA AUGGUUUGUG \
GAACAC UAUA CGUCGUGU UACCGGACAU A
CCUUUAUUUGUCUAAUUUGA^ AAG C UG AGAGGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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Mature sequence |
Cmi-Mir-15-P1a_5p |
mirBase accession | None |
Sequence |
0- UAGCAGCACAUAAUGGUUUGUG -22
Get sequence
|
Star sequence |
Cmi-Mir-15-P1a_3p* |
mirBase accession | None |
Sequence |
37- CAGGCCAUGUUGUGCUGCCAUA -59
Get sequence
|