MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-15-P1a

Family name MIR-15 (all species)
Seed AGCAGCA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-15-P1b  Lch-Mir-15-P1c  Lch-Mir-15-P2a  Lch-Mir-15-P2b  Lch-Mir-15-P2c 
Orthologues Ami-Mir-15-P1a  Bta-Mir-15-P1a  Cfa-Mir-15-P1a  Cin-Mir-15-P1  Cja-Mir-15-P1a  Cli-Mir-15-P1a  Cmi-Mir-15-P1a  Cpi-Mir-15-P1a  Cpo-Mir-15-P1a  Dno-Mir-15-P1a  Dre-Mir-15-P1a1  Dre-Mir-15-P1a2  Eca-Mir-15-P1a  Ete-Mir-15-P1a  Gga-Mir-15-P1a  Gja-Mir-15-P1a  Gmo-Mir-15-P1a2  Hsa-Mir-15-P1a  Laf-Mir-15-P1a  Loc-Mir-15-P1a  Mal-Mir-15-P1a2  Mdo-Mir-15-P1a  Mml-Mir-15-P1a  Mmr-Mir-15-P1a  Mmu-Mir-15-P1a  Mun-Mir-15-P1a  Neu-Mir-15-P1a  Oan-Mir-15-P1a  Ocu-Mir-15-P1a  Pab-Mir-15-P1a  Rno-Mir-15-P1a  Sha-Mir-15-P1a  Spt-Mir-15-P1a  Sto-Mir-15-P1a  Tgu-Mir-15-P1a  Tni-Mir-15-P1a2  Xla-Mir-15-P1a3  Xla-Mir-15-P1a4  Xtr-Mir-15-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(LatCha1_add)		 JH127182.1: 914023-914083 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GCACCUUUUGAAAGAUACCUUGGAGCACUGUAGCAGCACAUAAUGGUUUGUGAGUUAUAUAGAAUUAUGCAGGCCAUGUUGUGCUGCUGCAAAAAUACAAGGAUUUAAUCUACUCUGAAAA
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Structure
        10          20        30        40        50          
GCACCUUUUGAAAGAUA--|    GAGCAC            UA         GAGUUAUA 
                   CCUUG      UGUAGCAGCACA  AUGGUUUGU        \
                   GGAAC      ACGUCGUCGUGU  UACCGGACG        U
AAAAGUCUCAUCUAAUUUA^    AUAAAA            UG         UAUUAAGA 
 .       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsNo
Mature sequence

Lch-Mir-15-P1a_5p (predicted)
mirBase accessionNone
Sequence 
0- UAGCAGCACAUAAUGGUUUGUG -22
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Star sequence

Lch-Mir-15-P1a_3p* (predicted)
mirBase accessionNone
Sequence 
39- CAGGCCAUGUUGUGCUGCUGCA -61
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