MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-15-P1a

Family name MIR-15 (all species)
Seed AGCAGCA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-15-P1b  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Loc-Mir-15-P1d  Loc-Mir-15-P2a  Loc-Mir-15-P2b  Loc-Mir-15-P2c  Loc-Mir-15-P2d 
Orthologues Ami-Mir-15-P1a  Bta-Mir-15-P1a  Cfa-Mir-15-P1a  Cin-Mir-15-P1  Cja-Mir-15-P1a  Cli-Mir-15-P1a  Cmi-Mir-15-P1a  Cpi-Mir-15-P1a  Cpo-Mir-15-P1a  Dno-Mir-15-P1a  Dre-Mir-15-P1a1  Dre-Mir-15-P1a2  Eca-Mir-15-P1a  Ete-Mir-15-P1a  Gga-Mir-15-P1a  Gja-Mir-15-P1a  Gmo-Mir-15-P1a2  Hsa-Mir-15-P1a  Laf-Mir-15-P1a  Lch-Mir-15-P1a  Mal-Mir-15-P1a2  Mdo-Mir-15-P1a  Mml-Mir-15-P1a  Mmr-Mir-15-P1a  Mmu-Mir-15-P1a  Mun-Mir-15-P1a  Neu-Mir-15-P1a  Oan-Mir-15-P1a  Ocu-Mir-15-P1a  Pab-Mir-15-P1a  Rno-Mir-15-P1a  Sha-Mir-15-P1a  Spt-Mir-15-P1a  Sto-Mir-15-P1a  Tgu-Mir-15-P1a  Tni-Mir-15-P1a2  Xla-Mir-15-P1a3  Xla-Mir-15-P1a4  Xtr-Mir-15-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(LepOcu1)		 LG17: 24936841-24936899 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGAAGGCUUGUUAAAAACCUUGCUGUGUUGUAGCAGCACAUAAUGGUUUGUUGGUUGUACGGAGAUGCAAGCCAUACUGUGCUGCUGCAAAAACACAAGGAUCUGAGCUCCAGCCAUAC
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Structure
        10          20         30        40        50         
UGAAGGCUUGUUAAAAA--|    C   G-             UA         UGGUUGU 
                   CCUUG UGU  UUGUAGCAGCACA  AUGGUUUGU       \
                   GGAAC ACA  AACGUCGUCGUGU  UACCGAACG       A
CAUACCGACCUCGAGUCUA^    -   AA             CA         UAGAGGC 
       110       100         90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-15-P1a_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACAUAAUGGUUUGUU -22
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Star sequence

Loc-Mir-15-P1a_3p*
mirBase accessionNone
Sequence 
37- CAAGCCAUACUGUGCUGCUGCA -59
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