MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-15-P1b

Family name MIR-15 (all species)
Seed AGCAGCA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-15-P1a  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Loc-Mir-15-P1d  Loc-Mir-15-P2a  Loc-Mir-15-P2b  Loc-Mir-15-P2c  Loc-Mir-15-P2d 
Orthologues Aca-Mir-15-P1b  Ami-Mir-15-P1b  Bta-Mir-15-P1b  Cfa-Mir-15-P1b  Cin-Mir-15-P1  Cja-Mir-15-P1b  Cli-Mir-15-P1b  Cmi-Mir-15-P1b  Cpi-Mir-15-P1b  Cpo-Mir-15-P1b  Dno-Mir-15-P1b  Dre-Mir-15-P1b  Eca-Mir-15-P1b  Ete-Mir-15-P1b  Gga-Mir-15-P1b  Gja-Mir-15-P1b  Gmo-Mir-15-P1b  Hsa-Mir-15-P1b  Laf-Mir-15-P1b  Lch-Mir-15-P1b  Mal-Mir-15-P1b  Mml-Mir-15-P1b  Mmr-Mir-15-P1b  Mmu-Mir-15-P1b  Mun-Mir-15-P1b  Oan-Mir-15-P1b  Ocu-Mir-15-P1b  Pab-Mir-15-P1b  Pbv-Mir-15-P1b  Rno-Mir-15-P1b  Sha-Mir-15-P1b  Spt-Mir-15-P1b  Sto-Mir-15-P1b  Tgu-Mir-15-P1b  Tni-Mir-15-P1b  Xla-Mir-15-P1b1  Xla-Mir-15-P1b2  Xtr-Mir-15-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(LepOcu1)		 LG14: 5761840-5761900 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GGCUGAAUAUUUGAAGGCCUUAAAGUGCUGUAGCAGCACAUCAUGGUUUGCAACACUGUAGUGAAGAUGCGAACCAUUAUUUGCUGCUUUAGAAUUUUAAGGAAAAUGCAGAAGCUUAAAA
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Structure
        10          20        30        40        50          
GGCUGAAUAUUUGAAGG--|        G   U       C  C          ACACUGU 
                   CCUUAAAGU CUG AGCAGCA AU AUGGUUUGCA       \
                   GGAAUUUUA GAU UCGUCGU UA UACCAAGCGU       A
AAAAUUCGAAGACGUAAAA^        A   U       U  U          AGAAGUG 
 .       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut +2 on the 3p arm.
3' NTU No
MotifsNo
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-15-P1b_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACAUCAUGGUUUGCA -22
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Star sequence

Loc-Mir-15-P1b_3p*
mirBase accessionNone
Sequence 
39- CGAACCAUUAUUUGCUGCUUUA -61
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