Mir-15-P1b

MirGeneDB ID

Eca-Mir-15-P1b

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-15b

Paralogues

Eca-Mir-15-P1a Eca-Mir-15-P1c Eca-Mir-15-P1d Eca-Mir-15-P2a Eca-Mir-15-P2b Eca-Mir-15-P2c Eca-Mir-15-P2d

Orthologues

Aca-Mir-15-P1b Ami-Mir-15-P1b Bta-Mir-15-P1b Cfa-Mir-15-P1b Cin-Mir-15-P1 Cja-Mir-15-P1b Cli-Mir-15-P1b Cmi-Mir-15-P1b Cpi-Mir-15-P1b Cpo-Mir-15-P1b Dno-Mir-15-P1b Dre-Mir-15-P1b Ete-Mir-15-P1b Gga-Mir-15-P1b Gja-Mir-15-P1b Gmo-Mir-15-P1b Hsa-Mir-15-P1b Laf-Mir-15-P1b Lch-Mir-15-P1b Loc-Mir-15-P1b Mal-Mir-15-P1b Mml-Mir-15-P1b Mmr-Mir-15-P1b Mmu-Mir-15-P1b Mun-Mir-15-P1b Oan-Mir-15-P1b Ocu-Mir-15-P1b Pab-Mir-15-P1b Pbv-Mir-15-P1b Rno-Mir-15-P1b Sha-Mir-15-P1b Spt-Mir-15-P1b Sto-Mir-15-P1b Tgu-Mir-15-P1b Tni-Mir-15-P1b Xla-Mir-15-P1b1 Xla-Mir-15-P1b2 Xtr-Mir-15-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_002863925.1_EquCab3.0)

CM009166.1: 3408022-3408081 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1b)

Mir-15-P2b CM009166.1: 3407870-3407934 [-] UCSC Ensembl
Mir-15-P1b CM009166.1: 3408022-3408081 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUUUUGUAUUUUUGAGGCCUUAAAGUACUGUAGCAGCACAUCAUGGUUUACAUACUACAGUCAAGAUGCGAAUCAUUAUUUGCUGCUCUAGAAAUUUAAGGAAAUUCAUUCAAAACUAUA

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Structure

        10          20        30        40        50         
AUUUUGUAUUUUUGAGG--|      GUA   U       C  C      UA  UACUAC 
                   CCUUAAA   CUG AGCAGCA AU AUGGUU  CA      A
                   GGAAUUU   GAU UCGUCGU UA UACUAA  GU      G
AUAUCAAAACUUACUUAAA^      AAA   C       U  U      GC  AGAACU 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-15-P1b_5p

mirBase accession

MIMAT0012954

Sequence

0- UAGCAGCACAUCAUGGUUUACA -22

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Star sequence

Eca-Mir-15-P1b_3p*

mirBase accession

None

Sequence

38- CGAAUCAUUAUUUGCUGCUCUA -60

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