Mir-15-P1d

MirGeneDB ID

Eca-Mir-15-P1d

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-497

Paralogues

Eca-Mir-15-P1a Eca-Mir-15-P1b Eca-Mir-15-P1c Eca-Mir-15-P2a Eca-Mir-15-P2b Eca-Mir-15-P2c Eca-Mir-15-P2d

Orthologues

Ami-Mir-15-P1d Bta-Mir-15-P1d Cfa-Mir-15-P1d Cin-Mir-15-P1 Cja-Mir-15-P1d Cpo-Mir-15-P1d Dno-Mir-15-P1d Dre-Mir-15-P1d Ete-Mir-15-P1d Hsa-Mir-15-P1d Laf-Mir-15-P1d Loc-Mir-15-P1d Mdo-Mir-15-P1d Mml-Mir-15-P1d Mmr-Mir-15-P1d Mmu-Mir-15-P1d Neu-Mir-15-P1d Oan-Mir-15-P1d Ocu-Mir-15-P1d Pab-Mir-15-P1d Rno-Mir-15-P1d Sha-Mir-15-P1d Sto-Mir-15-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_002863925.1_EquCab3.0)

CM009158.1: 50388942-50389003 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1d)

Mir-15-P2d CM009158.1: 50388634-50388694 [-] UCSC Ensembl
Mir-15-P1d CM009158.1: 50388942-50389003 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCUCAACCCACCCCAGUCCUGCUCCCGCCCCAGCAGCACACUGUGGUUUGUACGGCACUGUGGCCACGUCCAAACCACACUGUGGUGUUAGAGCGAGGGUGGGGGAGGCACCGCUGAGGCUU

Get precursor sequence

Structure

        10          20        30        40        50        60
UCUCAACCCACCCCAGU--| UG   C   CCC    G    C         UACGGCACU 
                   CC  CUC CGC   AGCA CACA UGUGGUUUG         G
                   GG  GGG GCG   UUGU GUGU ACACCAAAC         U
UUCGGAGUCGCCACGGAGG^ GU   A   AGA    G    C         CUGCACCGG 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-15-P1d_5p

mirBase accession

MIMAT0013043

Sequence

0- CAGCAGCACACUGUGGUUUGUA -22

Get sequence

Star sequence

Eca-Mir-15-P1d_3p* (predicted)

mirBase accession

None

Sequence

40- CAAACCACACUGUGGUGUUAGA -62

Get sequence