MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-15-P1d

Family name MIR-15 (all species)
Seed AGCAGCA
Species Horse (Equus caballus)
MiRBase ID eca-mir-497
Paralogues Eca-Mir-15-P1a  Eca-Mir-15-P1b  Eca-Mir-15-P1c  Eca-Mir-15-P2a  Eca-Mir-15-P2b  Eca-Mir-15-P2c  Eca-Mir-15-P2d 
Orthologues Ami-Mir-15-P1d  Bta-Mir-15-P1d  Cfa-Mir-15-P1d  Cin-Mir-15-P1  Cja-Mir-15-P1d  Cpo-Mir-15-P1d  Dno-Mir-15-P1d  Dre-Mir-15-P1d  Ete-Mir-15-P1d  Hsa-Mir-15-P1d  Laf-Mir-15-P1d  Loc-Mir-15-P1d  Mdo-Mir-15-P1d  Mml-Mir-15-P1d  Mmr-Mir-15-P1d  Mmu-Mir-15-P1d  Neu-Mir-15-P1d  Oan-Mir-15-P1d  Ocu-Mir-15-P1d  Pab-Mir-15-P1d  Rno-Mir-15-P1d  Sha-Mir-15-P1d  Sto-Mir-15-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009158.1: 50388942-50389003 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1d)		 Mir-15-P2d CM009158.1: 50388634-50388694 [-] UCSC Ensembl
Mir-15-P1d CM009158.1: 50388942-50389003 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUCAACCCACCCCAGUCCUGCUCCCGCCCCAGCAGCACACUGUGGUUUGUACGGCACUGUGGCCACGUCCAAACCACACUGUGGUGUUAGAGCGAGGGUGGGGGAGGCACCGCUGAGGCUU
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Structure
        10          20        30        40        50        60
UCUCAACCCACCCCAGU--| UG   C   CCC    G    C         UACGGCACU 
                   CC  CUC CGC   AGCA CACA UGUGGUUUG         G
                   GG  GGG GCG   UUGU GUGU ACACCAAAC         U
UUCGGAGUCGCCACGGAGG^ GU   A   AGA    G    C         CUGCACCGG 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-15-P1d_5p
mirBase accessionMIMAT0013043
Sequence 
0- CAGCAGCACACUGUGGUUUGUA -22
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Star sequence

Eca-Mir-15-P1d_3p* (predicted)
mirBase accessionNone
Sequence 
40- CAAACCACACUGUGGUGUUAGA -62
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