MirGeneDB ID | Ami-Mir-15-P1d |
Family name |
MIR-15 (all species) |
Seed |
AGCAGCA |
Species |
American alligator (Alligator mississippiensis) |
MiRBase ID |
ami-mir-497
|
Paralogues |
Ami-Mir-15-P1a
Ami-Mir-15-P1b
Ami-Mir-15-P1c
Ami-Mir-15-P2a
Ami-Mir-15-P2b
Ami-Mir-15-P2c
Ami-Mir-15-P2d
|
Orthologues |
Bta-Mir-15-P1d
Cfa-Mir-15-P1d
Cin-Mir-15-P1
Cja-Mir-15-P1d
Cpo-Mir-15-P1d
Dno-Mir-15-P1d
Dre-Mir-15-P1d
Eca-Mir-15-P1d
Ete-Mir-15-P1d
Hsa-Mir-15-P1d
Laf-Mir-15-P1d
Loc-Mir-15-P1d
Mdo-Mir-15-P1d
Mml-Mir-15-P1d
Mmr-Mir-15-P1d
Mmu-Mir-15-P1d
Neu-Mir-15-P1d
Oan-Mir-15-P1d
Ocu-Mir-15-P1d
Pab-Mir-15-P1d
Rno-Mir-15-P1d
Sha-Mir-15-P1d
Sto-Mir-15-P1d
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Olfactores
|
Genome context (GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017712037.1: 56271-56327 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CCGCAUGUGGAUGCAGGCCCAGCCCCGCCCCAGCAGCACAUCAUGGUUUGUGGGGUCUCGUGGCACAGACCAUGGCGUGGUGCUACCGCGGGGCCGGGGAGACAGCGUGGGAGACAG
Get precursor sequence
|
Structure | 10 20 30 40 50
CCGCAUGUGGAUGCAGG--| A CCC G AU GGGUC
CCC GCCCCGC AGCA CAC CAUGGUUUGUG \
GGG CGGGGCG UCGU GUG GUACCAGACAC U
GACAGAGGGUGCGACAGAG^ C CCA G CG GGUGC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ami-Mir-15-P1d_5p |
mirBase accession | MIMAT0038299 |
Sequence |
0- CAGCAGCACAUCAUGGUUUGUG -22
Get sequence
|
Star sequence |
Ami-Mir-15-P1d_3p* |
mirBase accession | MIMAT0038300 |
Sequence |
35- CAGACCAUGGCGUGGUGCUACC -57
Get sequence
|