MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-15-P1d

Family name MIR-15 (all species)
Seed AGCAGCA
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-497
Paralogues Cfa-Mir-15-P1a  Cfa-Mir-15-P1b  Cfa-Mir-15-P1c  Cfa-Mir-15-P2a  Cfa-Mir-15-P2b  Cfa-Mir-15-P2c  Cfa-Mir-15-P2d 
Orthologues Ami-Mir-15-P1d  Bta-Mir-15-P1d  Cin-Mir-15-P1  Cja-Mir-15-P1d  Cpo-Mir-15-P1d  Dno-Mir-15-P1d  Dre-Mir-15-P1d  Eca-Mir-15-P1d  Ete-Mir-15-P1d  Hsa-Mir-15-P1d  Laf-Mir-15-P1d  Loc-Mir-15-P1d  Mdo-Mir-15-P1d  Mml-Mir-15-P1d  Mmr-Mir-15-P1d  Mmu-Mir-15-P1d  Neu-Mir-15-P1d  Oan-Mir-15-P1d  Ocu-Mir-15-P1d  Pab-Mir-15-P1d  Rno-Mir-15-P1d  Sha-Mir-15-P1d  Sto-Mir-15-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(canFam3_add)		 chr5: 32045764-32045825 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1d)		 Mir-15-P2d chr5: 32045450-32045510 [-] UCSC Ensembl
Mir-15-P1d chr5: 32045764-32045825 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUCAGCCCACCCCAGUCCUGCUCCCGCCCCAGCAGCACACUGUGGUUUGUACGGUACUGUGGCCACGUCCAGACCACACUGUGGUGUUAGGGUGAGGGUGGGGGAGGCACCGCUGAGGCUU
Get precursor sequence
Structure
        10          20        30        40        50        60
UCUCAGCCCACCCCAGU--| UG   C     C    G    C         U  GGUACU 
                   CC  CUC CGCCC AGCA CACA UGUGGUUUG AC      G
                   GG  GGG GUGGG UUGU GUGU ACACCAGAC UG      U
UUCGGAGUCGCCACGGAGG^ GU   A     A    G    C         C  CACCGG 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-15-P1d_5p
mirBase accessionMIMAT0006691
Sequence 
0- CAGCAGCACACUGUGGUUUGUAC -23
Get sequence
Proposed targets TargetScanVert: cfa-miR-497
miRDB: MIMAT0006691
Star sequence

Cfa-Mir-15-P1d_3p*
mirBase accessionNone
Sequence 
39- CCAGACCACACUGUGGUGUUAGG -62
Get sequence