Mir-15-P1a

MirGeneDB ID

Cfa-Mir-15-P1a

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-15a

Paralogues

Cfa-Mir-15-P1b Cfa-Mir-15-P1c Cfa-Mir-15-P1d Cfa-Mir-15-P2a Cfa-Mir-15-P2b Cfa-Mir-15-P2c Cfa-Mir-15-P2d

Orthologues

Ami-Mir-15-P1a Bta-Mir-15-P1a Cin-Mir-15-P1 Cja-Mir-15-P1a Cli-Mir-15-P1a Cmi-Mir-15-P1a Cpi-Mir-15-P1a Cpo-Mir-15-P1a Dno-Mir-15-P1a Dre-Mir-15-P1a1 Dre-Mir-15-P1a2 Eca-Mir-15-P1a Ete-Mir-15-P1a Gga-Mir-15-P1a Gja-Mir-15-P1a Gmo-Mir-15-P1a2 Hsa-Mir-15-P1a Laf-Mir-15-P1a Lch-Mir-15-P1a Loc-Mir-15-P1a Mal-Mir-15-P1a2 Mdo-Mir-15-P1a Mml-Mir-15-P1a Mmr-Mir-15-P1a Mmu-Mir-15-P1a Mun-Mir-15-P1a Neu-Mir-15-P1a Oan-Mir-15-P1a Ocu-Mir-15-P1a Pab-Mir-15-P1a Rno-Mir-15-P1a Sha-Mir-15-P1a Spt-Mir-15-P1a Sto-Mir-15-P1a Tgu-Mir-15-P1a Tni-Mir-15-P1a2 Xla-Mir-15-P1a3 Xla-Mir-15-P1a4 Xtr-Mir-15-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(canFam3_add)

chr22: 1846880-1846938 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1a)

Mir-15-P1a chr22: 1846880-1846938 [+] UCSC Ensembl
Mir-15-P2a chr22: 1847020-1847084 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUUUUAAAAAACAAAAACCUUGGAGUAAAGUAGCAGCACAUAAUGGUUUGUGGAUUUUGAAAAGGUGCAGGCCAUAUUGUGCUGCCUCAAAAAUACAAGGAUCUGAUCUUCUGAAGAAA

Get precursor sequence

Structure

        10          20        30        40        50         
GUUUUAAAAAACAAAAA--|    GAGUAAAGUA        UA         GGAUUUU 
                   CCUUG          GCAGCACA  AUGGUUUGU       \
                   GGAAC          CGUCGUGU  UACCGGACG       G
AAAGAAGUCUUCUAGUCUA^    AUAAAAACUC        UA         UGGAAAA 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-15-P1a_5p

mirBase accession

MIMAT0006647

Sequence

0- UAGCAGCACAUAAUGGUUUGUG -22

Get sequence

Proposed targets

TargetScanVert: cfa-miR-15a
miRDB: MIMAT0006647

Star sequence

Cfa-Mir-15-P1a_3p*

mirBase accession

None

Sequence

37- CAGGCCAUAUUGUGCUGCCUCA -59

Get sequence