Mir-15-P1a

MirGeneDB ID

Gga-Mir-15-P1a

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-15a

Paralogues

Gga-Mir-15-P1b Gga-Mir-15-P1c Gga-Mir-15-P2a Gga-Mir-15-P2b Gga-Mir-15-P2c

Orthologues

Ami-Mir-15-P1a Bta-Mir-15-P1a Cfa-Mir-15-P1a Cin-Mir-15-P1 Cli-Mir-15-P1a Cmi-Mir-15-P1a Cpi-Mir-15-P1a Cpo-Mir-15-P1a Dno-Mir-15-P1a Dre-Mir-15-P1a1 Dre-Mir-15-P1a2 Ete-Mir-15-P1a Gja-Mir-15-P1a Gmo-Mir-15-P1a2 Hsa-Mir-15-P1a Lch-Mir-15-P1a Loc-Mir-15-P1a Mal-Mir-15-P1a2 Mdo-Mir-15-P1a Mml-Mir-15-P1a Mmu-Mir-15-P1a Mun-Mir-15-P1a Oan-Mir-15-P1a Ocu-Mir-15-P1a Rno-Mir-15-P1a Sha-Mir-15-P1a Spt-Mir-15-P1a Sto-Mir-15-P1a Tgu-Mir-15-P1a Tni-Mir-15-P1a2 Xla-Mir-15-P1a3 Xla-Mir-15-P1a4 Xtr-Mir-15-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(Gallus_gallus.GRCg6a)

1: 170717767-170717825 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1a)

Mir-15-P2a 1: 170717622-170717684 [-] UCSC Ensembl
Mir-15-P1a 1: 170717767-170717825 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCAAAGUGCAGUAGACACCUUGGCAUAACGUAGCAGCACAUAAUGGUUUGUGGGUUUUGAAAAGGUGCAGGCCAUAUUGUGCUGCCUCAAAAAUACAAGGAUUUCAUCAUCCUGAAGAG

Get precursor sequence

Structure

        10          20        30        40        50         
UCAAAGUGCAGUAGACA--|    GCAUAACGUA        UA         GGGUUUU 
                   CCUUG          GCAGCACA  AUGGUUUGU       \
                   GGAAC          CGUCGUGU  UACCGGACG       G
GAGAAGUCCUACUACUUUA^    AUAAAAACUC        UA         UGGAAAA 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Ch	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-15-P1a_5p

mirBase accession

MIMAT0001117

Sequence

0- UAGCAGCACAUAAUGGUUUGUG -22

Get sequence

Proposed targets

TargetScanVert: gga-miR-15a
miRDB: MIMAT0001117

Star sequence

Gga-Mir-15-P1a_3p*

mirBase accession

None

Sequence

37- CAGGCCAUAUUGUGCUGCCUCA -59

Get sequence