Mir-15-P2c

MirGeneDB ID

Gga-Mir-15-P2c

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-16c

Paralogues

Gga-Mir-15-P1a Gga-Mir-15-P1b Gga-Mir-15-P1c Gga-Mir-15-P2a Gga-Mir-15-P2b

Orthologues

Aca-Mir-15-P2c Ami-Mir-15-P2c Bta-Mir-15-P2c Cfa-Mir-15-P2c Cin-Mir-15-P2 Cja-Mir-15-P2c Cli-Mir-15-P2c Cmi-Mir-15-P2c Cpi-Mir-15-P2c Cpo-Mir-15-P2c Dno-Mir-15-P2c Dre-Mir-15-P2c-v1 Dre-Mir-15-P2c-v2 Eca-Mir-15-P2c Ete-Mir-15-P2c Gja-Mir-15-P2c Hsa-Mir-15-P2c Laf-Mir-15-P2c Lch-Mir-15-P2c Loc-Mir-15-P2c Mdo-Mir-15-P2c-v1 Mdo-Mir-15-P2c-v2 Mml-Mir-15-P2c Mmr-Mir-15-P2c Mmu-Mir-15-P2c Mun-Mir-15-P2c Neu-Mir-15-P2c-v1 Neu-Mir-15-P2c-v2 Oan-Mir-15-P2c Ocu-Mir-15-P2c Pab-Mir-15-P2c Pbv-Mir-15-P2c Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Sha-Mir-15-P2c-v1 Sha-Mir-15-P2c-v2 Spt-Mir-15-P2c Tgu-Mir-15-P2c Xla-Mir-15-P2c1 Xla-Mir-15-P2c2 Xtr-Mir-15-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(Gallus_gallus.GRCg6a)

4: 4044236-4044300 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2c)

Mir-15-P2c 4: 4044236-4044300 [-] UCSC Ensembl
Mir-15-P1c 4: 4044608-4044665 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CACGGGGCUGGAGAGCUGUCAGCAGUGCUCUAGCAGCACGUAAAUACUGGAGUGGGGGAUCGCCUGUUGCUCUCCAGUAUUGCAUUGCUGCUUUAGUGAGGCUGGAAAUCAGUCCCUGGCACCUG

Get precursor sequence

Structure

        10          20        30        40        50        60  
CACGGGGCUGGAGAGCUG--|    AG    CU       CGUA          UGGGGGAUC 
                    UCAGC  UGCU  AGCAGCA    AAUACUGGAG         \
                    GGUCG  GUGA  UCGUCGU    UUAUGACCUC         G
GUCCACGGUCCCUGACUAAA^    GA    UU       UACG          UCGUUGUCC 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut +1 on both arms.

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-15-P2c_5p

mirBase accession

MIMAT0007739

Sequence

0- UAGCAGCACGUAAAUACUGGAG -22

Get sequence

Proposed targets

TargetScanVert: gga-miR-16c-5p
miRDB: MIMAT0007739

Star sequence

Gga-Mir-15-P2c_3p*

mirBase accession

MIMAT0026786

Sequence

43- CCAGUAUUGCAUUGCUGCUUUA -65

Get sequence

Proposed targets

TargetScanVert: gga-miR-16c-3p
miRDB: MIMAT0026786