MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-15-P2c-v1

Family name MIR-15 (all species)
Seed AGCAGCA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-457b
Paralogues Dre-Mir-15-P1a1  Dre-Mir-15-P1a2  Dre-Mir-15-P1b  Dre-Mir-15-P1d  Dre-Mir-15-P2a1  Dre-Mir-15-P2a2  Dre-Mir-15-P2b  Dre-Mir-15-P2c-v2  Dre-Mir-15-P2d 
Orthologues Aca-Mir-15-P2c  Ami-Mir-15-P2c  Bta-Mir-15-P2c  Cfa-Mir-15-P2c  Cin-Mir-15-P2  Cja-Mir-15-P2c  Cli-Mir-15-P2c  Cmi-Mir-15-P2c  Cpi-Mir-15-P2c  Cpo-Mir-15-P2c  Dno-Mir-15-P2c  Eca-Mir-15-P2c  Ete-Mir-15-P2c  Gga-Mir-15-P2c  Gja-Mir-15-P2c  Hsa-Mir-15-P2c  Laf-Mir-15-P2c  Lch-Mir-15-P2c  Loc-Mir-15-P2c  Mdo-Mir-15-P2c-v1  Mdo-Mir-15-P2c-v2  Mml-Mir-15-P2c  Mmr-Mir-15-P2c  Mmu-Mir-15-P2c  Mun-Mir-15-P2c  Neu-Mir-15-P2c-v1  Neu-Mir-15-P2c-v2  Oan-Mir-15-P2c  Ocu-Mir-15-P2c  Pab-Mir-15-P2c  Pbv-Mir-15-P2c  Rno-Mir-15-P2c3  Rno-Mir-15-P2c4  Sha-Mir-15-P2c-v1  Sha-Mir-15-P2c-v2  Spt-Mir-15-P2c  Tgu-Mir-15-P2c  Xla-Mir-15-P2c1  Xla-Mir-15-P2c2  Xtr-Mir-15-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(danRer11)		 chr14: 31521938-31521997 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2c-v1)		 Mir-15-P2c-v1 chr14: 31521938-31521997 [-] UCSC Ensembl
Mir-15-P2c-v2 chr14: 31521939-31521996 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGAGCAGCAGAUCUGAAGGGAAUGUACUAAAGCAGCACAUAAAUACUGGAGGUGAUUGUGGUGUUAUCCAGUAUUGCUGUUCUGCUGUAGUAAGACCUGUCAGCACUUACAGACUCCAA
Get precursor sequence
Structure
        10            20        30        40        50         
GAGAGCAGCAGAUCUGA----|  GAAUG     A     C   UA         GGUGAUU 
                     AGG     UACUA AGCAG ACA  AAUACUGGA       G
                     UCC     AUGAU UCGUC UGU  UUAUGACCU       U
AACCUCAGACAUUCACGACUG^  AGA--     G     U   CG         AUUGUGG 
.       110       100          90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-15-P2c-v1_5p
mirBase accessionMIMAT0001884
Sequence 
0- AAGCAGCACAUAAAUACUGGAG -22
Get sequence
Proposed targets TargetScanFish: dre-miR-457b
Star sequence

Dre-Mir-15-P2c-v1_3p*
mirBase accessionMIMAT0032004
Sequence 
38- CCAGUAUUGCUGUUCUGCUGUA -60
Get sequence