Mir-15-P2a1

MirGeneDB ID

Dre-Mir-15-P2a1

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-16b

Paralogues

Dre-Mir-15-P1a1 Dre-Mir-15-P1a2 Dre-Mir-15-P1b Dre-Mir-15-P1d Dre-Mir-15-P2a2 Dre-Mir-15-P2b Dre-Mir-15-P2c-v1 Dre-Mir-15-P2c-v2 Dre-Mir-15-P2d

Orthologues

Ami-Mir-15-P2a Bta-Mir-15-P2a Cfa-Mir-15-P2a Cin-Mir-15-P2 Cja-Mir-15-P2a Cli-Mir-15-P2a Cmi-Mir-15-P2a Cpi-Mir-15-P2a Cpo-Mir-15-P2a Dno-Mir-15-P2a Eca-Mir-15-P2a Ete-Mir-15-P2a Gga-Mir-15-P2a Gja-Mir-15-P2a Hsa-Mir-15-P2a Laf-Mir-15-P2a Lch-Mir-15-P2a Loc-Mir-15-P2a Mdo-Mir-15-P2a Mml-Mir-15-P2a Mmr-Mir-15-P2a Mmu-Mir-15-P2a Mun-Mir-15-P2a Neu-Mir-15-P2a Oan-Mir-15-P2a Ocu-Mir-15-P2a Pab-Mir-15-P2a Pbv-Mir-15-P2a Rno-Mir-15-P2a Sha-Mir-15-P2a Spt-Mir-15-P2a Sto-Mir-15-P2a Tgu-Mir-15-P2a Xtr-Mir-15-P2a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Olfactores

Genome context
(danRer11)

chr1: 46722416-46722480 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2a1)

Mir-15-P2a1 chr1: 46722416-46722480 [-] UCSC Ensembl
Mir-15-P1a1 chr1: 46722633-46722692 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGGCCGUGUGACAGACUGGCUGCCUGGCUGUAGCAGCACGUAAAUAUUGGAGUCAAAGCACUUGCGAAUCCUCCAGUAUUGACCGUGCUGCUGGAGUUAGGCGGGCCGUUUACCGUCUGCGGGGG

Get precursor sequence

Structure

        10          20        30        40         50        60 
UGGCCGUGUGACAGACU-  -          G          UA-|         UCAAAGCA 
                  GG CUGCCUGGCU UAGCAGCACG   AAUAUUGGAG        C
                  CC GGCGGAUUGA GUCGUCGUGC   UUAUGACCUC        U
GGGGGCGUCUGCCAUUUG  G          G          CAG^         CUAAGCGU 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-15-P2a1_5p

mirBase accession

MIMAT0001775

Sequence

0- UAGCAGCACGUAAAUAUUGGAG -22

Get sequence

Proposed targets

TargetScanFish: dre-miR-16b

Star sequence

Dre-Mir-15-P2a1_3p*

mirBase accession

None

Sequence

42- CCAGUAUUGACCGUGCUGCUGGA -65

Get sequence