MirGeneDB 2.1
MirGeneDB ID

Cli-Mir-15-P2a

Family name MIR-15 (all species)
Seed AGCAGCA
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-16a-1
Paralogues Cli-Mir-15-P1a  Cli-Mir-15-P1b  Cli-Mir-15-P1c  Cli-Mir-15-P2b  Cli-Mir-15-P2c 
Orthologues Ami-Mir-15-P2a  Bta-Mir-15-P2a  Cfa-Mir-15-P2a  Cin-Mir-15-P2  Cmi-Mir-15-P2a  Cpi-Mir-15-P2a  Cpo-Mir-15-P2a  Dno-Mir-15-P2a  Dre-Mir-15-P2a1  Dre-Mir-15-P2a2  Ete-Mir-15-P2a  Gga-Mir-15-P2a  Gja-Mir-15-P2a  Gmo-Mir-15-P2a2  Hsa-Mir-15-P2a  Lch-Mir-15-P2a  Loc-Mir-15-P2a  Mal-Mir-15-P2a2  Mdo-Mir-15-P2a  Mml-Mir-15-P2a  Mmu-Mir-15-P2a  Mun-Mir-15-P2a  Oan-Mir-15-P2a  Ocu-Mir-15-P2a  Pbv-Mir-15-P2a  Rno-Mir-15-P2a  Sha-Mir-15-P2a  Spt-Mir-15-P2a  Sto-Mir-15-P2a  Tgu-Mir-15-P2a  Tni-Mir-15-P2a2  Xla-Mir-15-P2a3  Xla-Mir-15-P2a4  Xtr-Mir-15-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(colLiv2)		 scaffold17: 15185461-15185523 [-]
Clustered miRNAs
(< 50kb from Mir-15-P2a)		 Mir-15-P2a scaffold17: 15185461-15185523 [-]
Mir-15-P1a scaffold17: 15185606-15185664 [-]
Precursor
(pre-Mir +30nt flank)
AAUCUUGUGAUGCUGAUGUCUGUCAUACUUUAGCAGCACGUAAAUAUUGGUGUUAAGACUGUAAAUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGCUAGCCACUUCUGCAUGUGAGUCA
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Structure
        10          20        30         40        50        60
AAUCUUGUGAUGCUGAU--  CU   A              -| A        UGUUAAGAC 
                   GU  GUC UACUUUAGCAGCAC GU AAUAUUGG         U
                   CG  CGG AUGAAGUCGUCGUG CA UUAUGACC         G
ACUGAGUGUACGUCUUCAC  AU   A              U^ A        UCUAUAAAU 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Cl Cl Cl Cl Cl To
Mature sequence

Cli-Mir-15-P2a_5p
mirBase accessionMIMAT0038416
Sequence 
0- UAGCAGCACGUAAAUAUUGGUG -22
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Star sequence

Cli-Mir-15-P2a_3p*
mirBase accessionMIMAT0038417
Sequence 
40- CCAGUAUUAACUGUGCUGCUGAA -63
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