Mir-15-P2a

MirGeneDB ID

Mmu-Mir-15-P2a

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-16-1

Paralogues

Mmu-Mir-15-P1a Mmu-Mir-15-P1b Mmu-Mir-15-P1c-v1 Mmu-Mir-15-P1c-v2 Mmu-Mir-15-P1c-v3 Mmu-Mir-15-P1d Mmu-Mir-15-P2b Mmu-Mir-15-P2c Mmu-Mir-15-P2d

Orthologues

Ami-Mir-15-P2a Bta-Mir-15-P2a Cfa-Mir-15-P2a Cin-Mir-15-P2 Cja-Mir-15-P2a Cli-Mir-15-P2a Cmi-Mir-15-P2a Cpi-Mir-15-P2a Cpo-Mir-15-P2a Dno-Mir-15-P2a Dre-Mir-15-P2a1 Dre-Mir-15-P2a2 Eca-Mir-15-P2a Ete-Mir-15-P2a Gga-Mir-15-P2a Gja-Mir-15-P2a Gmo-Mir-15-P2a2 Hsa-Mir-15-P2a Laf-Mir-15-P2a Lch-Mir-15-P2a Loc-Mir-15-P2a Mal-Mir-15-P2a2 Mdo-Mir-15-P2a Mml-Mir-15-P2a Mmr-Mir-15-P2a Mun-Mir-15-P2a Neu-Mir-15-P2a Oan-Mir-15-P2a Ocu-Mir-15-P2a Pab-Mir-15-P2a Pbv-Mir-15-P2a Rno-Mir-15-P2a Sha-Mir-15-P2a Spt-Mir-15-P2a Sto-Mir-15-P2a Tgu-Mir-15-P2a Tni-Mir-15-P2a2 Xla-Mir-15-P2a3 Xla-Mir-15-P2a4 Xtr-Mir-15-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(mm10)

chr14: 61631893-61631957 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2a)

Mir-15-P2a chr14: 61631893-61631957 [-] UCSC Ensembl
Mir-15-P1a chr14: 61632038-61632096 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUCCUAUGAUAGCAAUGUCAGCGGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUGAAAUUACCUCCAGUAUUGACUGUGCUGCUGAAGUAAGGUUGGCAAUACUCUACAACUGUAAU

Get precursor sequence

Structure

        10          20        30         40        50        60 
GCUCCUAUGAUAGCAAU--      GG   C          -| A        CGUUAAGAUU 
                   GUCAGC  UGC UUAGCAGCAC GU AAUAUUGG          C
                   CGGUUG  AUG AGUCGUCGUG CA UUAUGACC          U
UAAUGUCAACAUCUCAUAA      GA   A          U^ G        UCCAUUAAAG 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Mature sequence

Mmu-Mir-15-P2a_5p

mirBase accession

MIMAT0000527

Sequence

0- UAGCAGCACGUAAAUAUUGGCG -22

Get sequence

Proposed targets

microrna.org: MIMAT0000527
TargetScanVert: mmu-miR-16-5p
miRDB: MIMAT0000527

Star sequence

Mmu-Mir-15-P2a_3p*

mirBase accession

MIMAT0004625

Sequence

42- CCAGUAUUGACUGUGCUGCUGAA -65

Get sequence

Proposed targets

microrna.org: MIMAT0004625
TargetScanVert: mmu-miR-16-1-3p
miRDB: MIMAT0004625