Mir-15-P2a

MirGeneDB ID

Bta-Mir-15-P2a

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-16a

Paralogues

Bta-Mir-15-P1a Bta-Mir-15-P1b Bta-Mir-15-P1c Bta-Mir-15-P1d Bta-Mir-15-P2b Bta-Mir-15-P2c Bta-Mir-15-P2d

Orthologues

Ami-Mir-15-P2a Cfa-Mir-15-P2a Cin-Mir-15-P2 Cja-Mir-15-P2a Cli-Mir-15-P2a Cmi-Mir-15-P2a Cpi-Mir-15-P2a Cpo-Mir-15-P2a Dno-Mir-15-P2a Dre-Mir-15-P2a1 Dre-Mir-15-P2a2 Eca-Mir-15-P2a Ete-Mir-15-P2a Gga-Mir-15-P2a Gja-Mir-15-P2a Gmo-Mir-15-P2a2 Hsa-Mir-15-P2a Laf-Mir-15-P2a Lch-Mir-15-P2a Loc-Mir-15-P2a Mal-Mir-15-P2a2 Mdo-Mir-15-P2a Mml-Mir-15-P2a Mmr-Mir-15-P2a Mmu-Mir-15-P2a Mun-Mir-15-P2a Neu-Mir-15-P2a Oan-Mir-15-P2a Ocu-Mir-15-P2a Pab-Mir-15-P2a Pbv-Mir-15-P2a Rno-Mir-15-P2a Sha-Mir-15-P2a Spt-Mir-15-P2a Sto-Mir-15-P2a Tgu-Mir-15-P2a Tni-Mir-15-P2a2 Xla-Mir-15-P2a3 Xla-Mir-15-P2a4 Xtr-Mir-15-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037339.1: 19500926-19500990 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2a)

Mir-15-P2a NC_037339.1: 19500926-19500990 [-] UCSC Ensembl
Mir-15-P1a NC_037339.1: 19501072-19501130 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUUUUAUGAUAGCAAUGUCAGCAGUGCCUUAGCAGCACGUAAAUAUUGGUGUUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGUUGGCCAUACUCUACAGUCAUAUU

Get precursor sequence

Structure

        10          20        30         40        50        60 
GCUUUUAUGAUAGCAAU--      AG   C          -| A        UGUUAAGAUU 
                   GUCAGC  UGC UUAGCAGCAC GU AAUAUUGG          C
                   CGGUUG  AUG AGUCGUCGUG CA UUAUGACC          U
UUAUACUGACAUCUCAUAC      GA   A          U^ A        UCUAUUAAAA 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-15-P2a_5p

mirBase accession

MIMAT0009242

Sequence

0- UAGCAGCACGUAAAUAUUGGUG -22

Get sequence

Proposed targets

TargetScanVert: bta-miR-16a

Star sequence

Bta-Mir-15-P2a_3p*

mirBase accession

None

Sequence

42- CCAGUAUUAACUGUGCUGCUGAA -65

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