MirGeneDB ID | Neu-Mir-15-P2a |
Family name |
MIR-15 (all species) |
Seed |
AGCAGCA |
Species |
Tammar Wallaby (Notamacropus eugenii) |
MiRBase ID |
|
Paralogues |
Neu-Mir-15-P1a
Neu-Mir-15-P1c
Neu-Mir-15-P1d
Neu-Mir-15-P2b
Neu-Mir-15-P2c-v1
Neu-Mir-15-P2c-v2
Neu-Mir-15-P2d
|
Orthologues |
Ami-Mir-15-P2a
Bta-Mir-15-P2a
Cfa-Mir-15-P2a
Cin-Mir-15-P2
Cja-Mir-15-P2a
Cli-Mir-15-P2a
Cmi-Mir-15-P2a
Cpi-Mir-15-P2a
Cpo-Mir-15-P2a
Dno-Mir-15-P2a
Dre-Mir-15-P2a1
Dre-Mir-15-P2a2
Eca-Mir-15-P2a
Ete-Mir-15-P2a
Gga-Mir-15-P2a
Gja-Mir-15-P2a
Gmo-Mir-15-P2a2
Hsa-Mir-15-P2a
Laf-Mir-15-P2a
Lch-Mir-15-P2a
Loc-Mir-15-P2a
Mal-Mir-15-P2a2
Mdo-Mir-15-P2a
Mml-Mir-15-P2a
Mmr-Mir-15-P2a
Mmu-Mir-15-P2a
Mun-Mir-15-P2a
Oan-Mir-15-P2a
Ocu-Mir-15-P2a
Pab-Mir-15-P2a
Pbv-Mir-15-P2a
Rno-Mir-15-P2a
Sha-Mir-15-P2a
Spt-Mir-15-P2a
Sto-Mir-15-P2a
Tgu-Mir-15-P2a
Tni-Mir-15-P2a2
Xla-Mir-15-P2a3
Xla-Mir-15-P2a4
Xtr-Mir-15-P2a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Olfactores
|
Genome context (GCA_028372415.1_mMacEug1.pri) |
CM051817.1: 106283763-106283827 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAUUGUGUGACAUCAAUGUCAACAGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUUUAAAAGUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGUUGGCACCUCUCCGCAAAAAAACA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CAUUGUGUGACAUCAAU-- AG C -| A CGUUAAGAUU
GUCAAC UGC UUAGCAGCAC GU AAUAUUGG U
CGGUUG AUG AGUCGUCGUG CA UUAUGACC U
ACAAAAAAACGCCUCUCCA GA A U^ A UCUAUGAAAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
Br |
Ce |
Fi |
Li |
Mi |
Mi |
Mi |
Mi |
Mi |
Ov |
Se |
Se |
Te |
Te |
Te |
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Mature sequence |
Neu-Mir-15-P2a_5p |
mirBase accession | None |
Sequence |
0- UAGCAGCACGUAAAUAUUGGCG -22
Get sequence
|
Star sequence |
Neu-Mir-15-P2a_3p* |
mirBase accession | None |
Sequence |
42- CCAGUAUUAACUGUGCUGCUGAA -65
Get sequence
|