MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-15-P2a2

Family name MIR-15 (all species)
Seed AGCAGCA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-16b
Paralogues Gmo-Mir-15-P1a2  Gmo-Mir-15-P1b  Gmo-Mir-15-P2b 
Orthologues Ami-Mir-15-P2a  Bta-Mir-15-P2a  Cfa-Mir-15-P2a  Cin-Mir-15-P2  Cja-Mir-15-P2a  Cli-Mir-15-P2a  Cmi-Mir-15-P2a  Cpi-Mir-15-P2a  Cpo-Mir-15-P2a  Dno-Mir-15-P2a  Dre-Mir-15-P2a2  Eca-Mir-15-P2a  Ete-Mir-15-P2a  Gga-Mir-15-P2a  Gja-Mir-15-P2a  Hsa-Mir-15-P2a  Laf-Mir-15-P2a  Lch-Mir-15-P2a  Loc-Mir-15-P2a  Mal-Mir-15-P2a2  Mdo-Mir-15-P2a  Mml-Mir-15-P2a  Mmr-Mir-15-P2a  Mmu-Mir-15-P2a  Mun-Mir-15-P2a  Neu-Mir-15-P2a  Oan-Mir-15-P2a  Ocu-Mir-15-P2a  Pab-Mir-15-P2a  Pbv-Mir-15-P2a  Rno-Mir-15-P2a  Sha-Mir-15-P2a  Spt-Mir-15-P2a  Sto-Mir-15-P2a  Tgu-Mir-15-P2a  Tni-Mir-15-P2a2  Xtr-Mir-15-P2a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Olfactores
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_413: 520865-520930 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2a2)
Mir-15-P1a2 GeneScaffold_413: 520593-520650 [+] UCSC Ensembl
Mir-15-P2a2 GeneScaffold_413: 520865-520930 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUAUGGGUGACGCUAUUGGUGGCCUUGCUGUAGCAGCACGUAAAUAUUGGAGUUUACACUGUCGCAUAUGCCUCCAGUAUUGAUCGUGCUGCUGAAGCAAAACUGACCACUUACCAACCUUAAAAC
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Structure
        10         20         30        40         50        60  
AUAUGGGUGACGCUAUU-   -  CC     G          UA-|         UUUACACUG 
                  GGU GG  UUGCU UAGCAGCACG   AAUAUUGGAG         \
                  CCA UC  AACGA GUCGUCGUGC   UUAUGACCUC         U
CAAAAUUCCAACCAUUCA   G  AA     A          UAG^         CGUAUACGC 
    120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-15-P2a2_5p

mirBase accessionMIMAT0044268
Sequence
0- UAGCAGCACGUAAAUAUUGGAG -22
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Star sequence

Gmo-Mir-15-P2a2_3p*

mirBase accessionNone
Sequence
43- CCAGUAUUGAUCGUGCUGCUGAA -66
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