MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-15-P2b

Family name MIR-15 (all species)
Seed AGCAGCA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-16a
Paralogues Gmo-Mir-15-P1a2  Gmo-Mir-15-P1b  Gmo-Mir-15-P2a2 
Orthologues Aca-Mir-15-P2b  Ami-Mir-15-P2b  Bta-Mir-15-P2b  Cfa-Mir-15-P2b  Cin-Mir-15-P2  Cli-Mir-15-P2b  Cmi-Mir-15-P2b  Cpi-Mir-15-P2b  Cpo-Mir-15-P2b  Dno-Mir-15-P2b  Dre-Mir-15-P2b  Ete-Mir-15-P2b  Gga-Mir-15-P2b  Gja-Mir-15-P2b  Hsa-Mir-15-P2b  Lch-Mir-15-P2b  Loc-Mir-15-P2b  Mal-Mir-15-P2b  Mdo-Mir-15-P2b  Mml-Mir-15-P2b  Mmu-Mir-15-P2b  Mun-Mir-15-P2b  Oan-Mir-15-P2b  Ocu-Mir-15-P2b  Pbv-Mir-15-P2b  Rno-Mir-15-P2b  Sha-Mir-15-P2b  Spt-Mir-15-P2b  Sto-Mir-15-P2b  Tgu-Mir-15-P2b  Tni-Mir-15-P2b  Xla-Mir-15-P2b1  Xla-Mir-15-P2b2  Xtr-Mir-15-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_1904: 97391-97455 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2b)
Mir-15-P2b GeneScaffold_1904: 97391-97455 [-] UCSC Ensembl
Mir-15-P1b GeneScaffold_1904: 97574-97634 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACGGGCCCUGCUCAUGUACCUGCCCCGCUUUAGCAGCACGUAAAUAUUGGUGUGUGAGACUAGACCCCAACCCCAAUGUUGGCAGUGCUGCUUCAGUGUGGCAUGGUCACACACUCCAUACCAAA
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Structure
        10         20         30         40        50        60 
ACGGGCCCUGCUCAUGU-   -    C    UU        -| A        U UGUGAGAC 
                  ACC UGCC CGCU  AGCAGCAC GU AAUAUUGG G        U
                  UGG ACGG GUGA  UCGUCGUG CG UUGUAACC C        A
AAACCAUACCUCACACAC   U    U    CU        A^ G        C AACCCCAG 
   120       110       100        90        80        70
Deep sequencing
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CommentThere are Dicer sites +1 and +2 on the 3p arm.
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-15-P2b_5p

mirBase accessionMIMAT0044156
Sequence
0- UAGCAGCACGUAAAUAUUGGUG -22
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Star sequence

Gmo-Mir-15-P2b_3p*

mirBase accessionMIMAT0044157
Sequence
43- CAAUGUUGGCAGUGCUGCUUCA -65
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