MirGeneDB 2.1

MirGeneDB ID

Pbv-Mir-15-P2b

Family name MIR-15 (all species)
Seed AGCAGCA
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-16b
Paralogues Pbv-Mir-15-P1b  Pbv-Mir-15-P1c  Pbv-Mir-15-P2a  Pbv-Mir-15-P2c 
Orthologues Aca-Mir-15-P2b  Ami-Mir-15-P2b  Bta-Mir-15-P2b  Cfa-Mir-15-P2b  Cin-Mir-15-P2  Cli-Mir-15-P2b  Cmi-Mir-15-P2b  Cpi-Mir-15-P2b  Cpo-Mir-15-P2b  Dno-Mir-15-P2b  Dre-Mir-15-P2b  Ete-Mir-15-P2b  Gga-Mir-15-P2b  Gja-Mir-15-P2b  Gmo-Mir-15-P2b  Hsa-Mir-15-P2b  Lch-Mir-15-P2b  Loc-Mir-15-P2b  Mal-Mir-15-P2b  Mdo-Mir-15-P2b  Mml-Mir-15-P2b  Mmu-Mir-15-P2b  Mun-Mir-15-P2b  Oan-Mir-15-P2b  Ocu-Mir-15-P2b  Rno-Mir-15-P2b  Sha-Mir-15-P2b  Spt-Mir-15-P2b  Sto-Mir-15-P2b  Tgu-Mir-15-P2b  Tni-Mir-15-P2b  Xla-Mir-15-P2b1  Xla-Mir-15-P2b2  Xtr-Mir-15-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE954284.1: 232858-232921 [-]
Clustered miRNAs
(< 50kb from Mir-15-P2b)
Mir-15-P2b KE954284.1: 232858-232921 [-]
Mir-15-P1b KE954284.1: 233025-233084 [-]
Precursor
(pre-Mir +30nt flank)
GGUAGAAUAACUGUUAUACUUGUUCCGCCCUAGCAGCACGUAAAUAUUGGUGUAGUAAAGAUAAUCUUAACGCCAAUAUUAUUGUGCUGCUUAAGCGUGACAGGGAUUAACCAACAUUGUUGGG
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Structure
        10          20        30        40        50        60 
GGUAGAAUAACUGUUAUA--|    UC   CCU         UA          UAGUAAAG 
                    CUUGU  CGC   AGCAGCACG  AAUAUUGGUG        A
                    GGACA  GCG   UCGUCGUGU  UUAUAACCGC        U
GGGUUGUUACAACCAAUUAG^    GU   AAU         UA          AAUUCUAA 
  120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Pbv-Mir-15-P2b_5p

mirBase accessionMIMAT0038834
Sequence
0- UAGCAGCACGUAAAUAUUGGUG -22
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Star sequence

Pbv-Mir-15-P2b_3p*

mirBase accessionMIMAT0038835
Sequence
42- CCAAUAUUAUUGUGCUGCUUAA -64
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