Mir-15-P2b

MirGeneDB ID

Cmi-Mir-15-P2b

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-15-P1a Cmi-Mir-15-P1b Cmi-Mir-15-P1c Cmi-Mir-15-P2a Cmi-Mir-15-P2c

Orthologues

Aca-Mir-15-P2b Ami-Mir-15-P2b Bta-Mir-15-P2b Cfa-Mir-15-P2b Cin-Mir-15-P2 Cja-Mir-15-P2b Cli-Mir-15-P2b Cpi-Mir-15-P2b Cpo-Mir-15-P2b Dno-Mir-15-P2b Dre-Mir-15-P2b Eca-Mir-15-P2b Ete-Mir-15-P2b Gga-Mir-15-P2b Gja-Mir-15-P2b Gmo-Mir-15-P2b Hsa-Mir-15-P2b Laf-Mir-15-P2b Lch-Mir-15-P2b Loc-Mir-15-P2b Mal-Mir-15-P2b Mdo-Mir-15-P2b Mml-Mir-15-P2b Mmr-Mir-15-P2b Mmu-Mir-15-P2b Mun-Mir-15-P2b Neu-Mir-15-P2b Oan-Mir-15-P2b Ocu-Mir-15-P2b Pab-Mir-15-P2b Pbv-Mir-15-P2b Rno-Mir-15-P2b Sha-Mir-15-P2b Spt-Mir-15-P2b Sto-Mir-15-P2b Tgu-Mir-15-P2b Tni-Mir-15-P2b Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xtr-Mir-15-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635855.1: 15681135-15681203 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUUACUUAAUGAAAAUGCCAGUUACAUUCUAGCAGCACGUAAAUAUUGGCGUGGUGAAAAUAAGACCAAAAAACGCCAAUAUUACUUGUGCUGCUGCAGUGUGGCGUGGUUUGUCGACUCCCAGUCCA

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Structure

        10         20         30        40         50        60   
UUUUACUUAAUGAAAAU-    -        C          UA-|          GGUGAAAAU 
                  GCCA GUUACAUU UAGCAGCACG   AAUAUUGGCGU         A
                  UGGU CGGUGUGA GUCGUCGUGU   UUAUAACCGCA         A
ACCUGACCCUCAGCUGUU    G        C          UCA^          AAAAACCAG 
       120       110       100        90        80        70

Deep sequencing

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Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-15-P2b_5p

mirBase accession

None

Sequence

0- UAGCAGCACGUAAAUAUUGGCGU -23

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Star sequence

Cmi-Mir-15-P2b_3p*

mirBase accession

None

Sequence

45- GCCAAUAUUACUUGUGCUGCUGCA -69

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