MirGeneDB 2.1

MirGeneDB ID

Gja-Mir-15-P2b

Family name MIR-15 (all species)
Seed AGCAGCA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-15-P1a  Gja-Mir-15-P1b  Gja-Mir-15-P1c  Gja-Mir-15-P2a  Gja-Mir-15-P2c  Gja-Mir-15-P2d 
Orthologues Aca-Mir-15-P2b  Ami-Mir-15-P2b  Bta-Mir-15-P2b  Cfa-Mir-15-P2b  Cin-Mir-15-P2  Cli-Mir-15-P2b  Cmi-Mir-15-P2b  Cpi-Mir-15-P2b  Cpo-Mir-15-P2b  Dno-Mir-15-P2b  Dre-Mir-15-P2b  Ete-Mir-15-P2b  Gga-Mir-15-P2b  Gmo-Mir-15-P2b  Hsa-Mir-15-P2b  Lch-Mir-15-P2b  Loc-Mir-15-P2b  Mal-Mir-15-P2b  Mdo-Mir-15-P2b  Mml-Mir-15-P2b  Mmu-Mir-15-P2b  Mun-Mir-15-P2b  Oan-Mir-15-P2b  Ocu-Mir-15-P2b  Pbv-Mir-15-P2b  Rno-Mir-15-P2b  Sha-Mir-15-P2b  Spt-Mir-15-P2b  Sto-Mir-15-P2b  Tgu-Mir-15-P2b  Tni-Mir-15-P2b  Xla-Mir-15-P2b1  Xla-Mir-15-P2b2  Xtr-Mir-15-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCF_001447785.1_Gekko_japonicus)
NW_015163604.1: 1350585-1350648 [+]
Precursor
(pre-Mir +30nt flank)
AGUAGAACAAUUGUUAUACUUGUUCCGCCCUAGCAGCACGUAAAUAUUGGUGUAGUAAAGAUAAUCUUAACACCAAUAUUAUUGUGCUGCUUAAGCGUGGCAGGGAUUAAGCAACACUUACUUU
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Structure
        10          20        30        40        50        60 
AGUAGAACAAUUGUUAUA--|    UC   CCU         UA          UAGUAAAG 
                    CUUGU  CGC   AGCAGCACG  AAUAUUGGUG        A
                    GGACG  GCG   UCGUCGUGU  UUAUAACCAC        U
UUUCAUUCACAACGAAUUAG^    GU   AAU         UA          AAUUCUAA 
  120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Gja-Mir-15-P2b_5p

mirBase accessionNone
Sequence
0- UAGCAGCACGUAAAUAUUGGUG -22
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Star sequence

Gja-Mir-15-P2b_3p*

mirBase accessionNone
Sequence
42- CCAAUAUUAUUGUGCUGCUUAA -64
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