Mir-15-P2b

MirGeneDB ID

Gja-Mir-15-P2b

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-15-P1a Gja-Mir-15-P1b Gja-Mir-15-P1c Gja-Mir-15-P2a Gja-Mir-15-P2c Gja-Mir-15-P2d

Orthologues

Aca-Mir-15-P2b Ami-Mir-15-P2b Bta-Mir-15-P2b Cfa-Mir-15-P2b Cin-Mir-15-P2 Cja-Mir-15-P2b Cli-Mir-15-P2b Cmi-Mir-15-P2b Cpi-Mir-15-P2b Cpo-Mir-15-P2b Dno-Mir-15-P2b Dre-Mir-15-P2b Eca-Mir-15-P2b Ete-Mir-15-P2b Gga-Mir-15-P2b Gmo-Mir-15-P2b Hsa-Mir-15-P2b Laf-Mir-15-P2b Lch-Mir-15-P2b Loc-Mir-15-P2b Mal-Mir-15-P2b Mdo-Mir-15-P2b Mml-Mir-15-P2b Mmr-Mir-15-P2b Mmu-Mir-15-P2b Mun-Mir-15-P2b Neu-Mir-15-P2b Oan-Mir-15-P2b Ocu-Mir-15-P2b Pab-Mir-15-P2b Pbv-Mir-15-P2b Rno-Mir-15-P2b Sha-Mir-15-P2b Spt-Mir-15-P2b Sto-Mir-15-P2b Tgu-Mir-15-P2b Tni-Mir-15-P2b Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xtr-Mir-15-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015163604.1: 1350585-1350648 [+]

Precursor
(pre-Mir +30nt flank)

AGUAGAACAAUUGUUAUACUUGUUCCGCCCUAGCAGCACGUAAAUAUUGGUGUAGUAAAGAUAAUCUUAACACCAAUAUUAUUGUGCUGCUUAAGCGUGGCAGGGAUUAAGCAACACUUACUUU

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Structure

        10          20        30        40        50        60 
AGUAGAACAAUUGUUAUA--|    UC   CCU         UA          UAGUAAAG 
                    CUUGU  CGC   AGCAGCACG  AAUAUUGGUG        A
                    GGACG  GCG   UCGUCGUGU  UUAUAACCAC        U
UUUCAUUCACAACGAAUUAG^    GU   AAU         UA          AAUUCUAA 
  120       110       100        90        80        70

Deep sequencing

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Comment

There is a second Dicer cut +1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Gja-Mir-15-P2b_5p

mirBase accession

None

Sequence

0- UAGCAGCACGUAAAUAUUGGUG -22

Get sequence

Star sequence

Gja-Mir-15-P2b_3p*

mirBase accession

None

Sequence

42- CCAAUAUUAUUGUGCUGCUUAA -64

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