MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-15-P1c

Family name MIR-15 (all species)
Seed AGCAGCA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-15-P1a  Gja-Mir-15-P1b  Gja-Mir-15-P2a  Gja-Mir-15-P2b  Gja-Mir-15-P2c  Gja-Mir-15-P2d 
Orthologues Aca-Mir-15-P1c  Ami-Mir-15-P1c  Bta-Mir-15-P1c  Cfa-Mir-15-P1c  Cin-Mir-15-P1  Cja-Mir-15-P1c  Cli-Mir-15-P1c  Cmi-Mir-15-P1c  Cpi-Mir-15-P1c  Cpo-Mir-15-P1c  Dno-Mir-15-P1c  Eca-Mir-15-P1c  Ete-Mir-15-P1c  Gga-Mir-15-P1c  Hsa-Mir-15-P1c  Laf-Mir-15-P1c  Lch-Mir-15-P1c  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Mdo-Mir-15-P1c-v1  Mdo-Mir-15-P1c-v2  Mml-Mir-15-P1c  Mmr-Mir-15-P1c  Mmu-Mir-15-P1c-v1  Mmu-Mir-15-P1c-v2  Mmu-Mir-15-P1c-v3  Mun-Mir-15-P1c  Neu-Mir-15-P1c  Oan-Mir-15-P1c  Ocu-Mir-15-P1c  Pab-Mir-15-P1c  Pbv-Mir-15-P1c  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Sha-Mir-15-P1c  Spt-Mir-15-P1c  Tgu-Mir-15-P1c  Xla-Mir-15-P1c1  Xla-Mir-15-P1c2  Xtr-Mir-15-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015219579.1: 41-98 [-]
Precursor
(pre-Mir +30nt flank)
CACCCCAAUGAUGUGUGACUUGUGGAGAUGUAGCAGCACAACAUGGUUUGUAGGGACAAGGAGAUACAGACCGUUCUGGGCUGCCUCAUUACCUCAAGGGUUAAGACAAGAAAGGUGA
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Structure
        10          20        30        40        50        
CACCCCAAUGAUGUGUGA--|   U  A    UA     A  AC          GGGAC 
                    CUUG GG GAUG  GCAGC CA  AUGGUUUGUA     A
                    GAAC CC UUAC  CGUCG GU  UGCCAGACAU     A
AGUGGAAAGAACAGAAUUGG^   U  A    UC     G  CU          AGAGG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
To
Mature sequence

Gja-Mir-15-P1c_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACAACAUGGUUUGUA -22
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Star sequence

Gja-Mir-15-P1c_3p*
mirBase accessionNone
Sequence 
36- CAGACCGUUCUGGGCUGCCUCA -58
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