Mir-15-P1c-v2

MirGeneDB ID

Mmu-Mir-15-P1c-v2

Family name

MIR-15 (all species)

Seed

AAACAUG

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-322

Paralogues

Mmu-Mir-15-P1a Mmu-Mir-15-P1b Mmu-Mir-15-P1c-v1 Mmu-Mir-15-P1c-v3 Mmu-Mir-15-P1d Mmu-Mir-15-P2a Mmu-Mir-15-P2b Mmu-Mir-15-P2c Mmu-Mir-15-P2d

Orthologues

Aca-Mir-15-P1c Ami-Mir-15-P1c Bta-Mir-15-P1c Cfa-Mir-15-P1c Cin-Mir-15-P1 Cja-Mir-15-P1c Cli-Mir-15-P1c Cmi-Mir-15-P1c Cpi-Mir-15-P1c Cpo-Mir-15-P1c Dno-Mir-15-P1c Eca-Mir-15-P1c Ete-Mir-15-P1c Gga-Mir-15-P1c Gja-Mir-15-P1c Hsa-Mir-15-P1c Laf-Mir-15-P1c Lch-Mir-15-P1c Loc-Mir-15-P1c Loc-Mir-15-P1c-as Mdo-Mir-15-P1c-v1 Mdo-Mir-15-P1c-v2 Mml-Mir-15-P1c Mmr-Mir-15-P1c Mun-Mir-15-P1c Neu-Mir-15-P1c Oan-Mir-15-P1c Ocu-Mir-15-P1c Pab-Mir-15-P1c Pbv-Mir-15-P1c Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Sha-Mir-15-P1c Spt-Mir-15-P1c Tgu-Mir-15-P1c Xla-Mir-15-P1c1 Xla-Mir-15-P1c2 Xtr-Mir-15-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(mm10)

chrX: 53054269-53054328 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1c-v2)

Mir-450-P3 chrX: 53048008-53048065 [-] UCSC Ensembl
Mir-450-P2 chrX: 53048171-53048227 [-] UCSC Ensembl
Mir-450-P1 chrX: 53048304-53048360 [-] UCSC Ensembl
Mir-542 chrX: 53049414-53049474 [-] UCSC Ensembl
Mir-351 chrX: 53053276-53053338 [-] UCSC Ensembl
Mir-15-P2c chrX: 53053987-53054049 [-] UCSC Ensembl
Mir-15-P1c-v3 chrX: 53054268-53054329 [-] UCSC Ensembl
Mir-15-P1c-v2 chrX: 53054269-53054328 [-] UCSC Ensembl
Mir-15-P1c-v1 chrX: 53054270-53054327 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGCCCCCACCCUCGUUGACUCCGAAGGGCUGCAGCAGCAAUUCAUGUUUUGGAGUAUUGCCAAGGUUCAAAACAUGAAGCGCUGCAACACCCCUUCGUGGGGAAUGUAGAAGGUGGGGAC

Get precursor sequence

Structure

        10         20         30        40        50         
GGCCCCCACCCUCGUUGA-   -|      C  CA     AA            AGUAUU 
                   CUC CGAAGGG UG  GCAGC  UUCAUGUUUUGG      G
                   GGG GCUUCCC AC  CGUCG  AAGUACAAAACU      C
CAGGGGUGGAAGAUGUAAG   U^      C  AA     CG            UGGAAC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Star sequence

Mmu-Mir-15-P1c-v2_5p*

mirBase accession

MIMAT0000548

Sequence

0- GCAGCAGCAAUUCAUGUUUUGG -22

Get sequence

Proposed targets

microrna.org: MIMAT0000548
TargetScanVert: mmu-miR-322-5p
miRDB: MIMAT0000548

Mature sequence

Mmu-Mir-15-P1c-v2_3p

mirBase accession

MIMAT0000549

Sequence

38- AAAACAUGAAGCGCUGCAACAC -60

Get sequence

Proposed targets

microrna.org: MIMAT0000549
TargetScanVert: mmu-miR-322-3p
miRDB: MIMAT0000549