Mir-542

MirGeneDB ID

Mmu-Mir-542

Family name

MIR-542 (all species)

Seed

GUGACAG

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-542

Paralogues

Orthologues

Bta-Mir-542 Cfa-Mir-542-v1 Cfa-Mir-542-v2 Cja-Mir-542 Cpo-Mir-542 Dno-Mir-542-v1 Dno-Mir-542-v2 Eca-Mir-542-v1 Eca-Mir-542-v2 Ete-Mir-542 Hsa-Mir-542-v1 Hsa-Mir-542-v2 Laf-Mir-542 Mml-Mir-542-v1 Mml-Mir-542-v2 Mmr-Mir-542-v1 Mmr-Mir-542-v2 Ocu-Mir-542-v1 Ocu-Mir-542-v2 Pab-Mir-542 Rno-Mir-542-P1a Rno-Mir-542-P1b Rno-Mir-542-P1c

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(mm10)

chrX: 53049414-53049474 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-542)

Mir-450-P3 chrX: 53048008-53048065 [-] UCSC Ensembl
Mir-450-P2 chrX: 53048171-53048227 [-] UCSC Ensembl
Mir-450-P1 chrX: 53048304-53048360 [-] UCSC Ensembl
Mir-542 chrX: 53049414-53049474 [-] UCSC Ensembl
Mir-351 chrX: 53053276-53053338 [-] UCSC Ensembl
Mir-15-P2c chrX: 53053987-53054049 [-] UCSC Ensembl
Mir-15-P1c-v3 chrX: 53054268-53054329 [-] UCSC Ensembl
Mir-15-P1c-v2 chrX: 53054269-53054328 [-] UCSC Ensembl
Mir-15-P1c-v1 chrX: 53054270-53054327 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGAGGUUACACAUGCAGGGAUCUCAGACGUCUCGGGGAUCAUCAUGUCACGAGAUACCACUGUGCCCUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAGCCACUCCUCUUCCUAAGAAUU

Get precursor sequence

Structure

        10          20        30        40        50          
UGAGGUUACACAUGCAG--| A        GUC    GG    UCA         AUACCA 
                   GG UCUCAGAC   UCGG  AUCA   UGUCACGAG      \
                   CC AGGGUCUG   AGUC  UAGU   ACAGUGUUC      C
UUAAGAAUCCUUCUCCUCA^ G        GAA    AA    UAG         CCGUGU 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

Comment

The Drosha cut in murids is -1 and they do not express the second variant at relatively high levels relative to the other mammals.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Star sequence

Mmu-Mir-542_5p*

mirBase accession

MIMAT0003171

Sequence

0- CUCGGGGAUCAUCAUGUCACGAG -23

Get sequence

Proposed targets

microrna.org: MIMAT0003171
TargetScanVert: mmu-miR-542-5p
miRDB: MIMAT0003171

Mature sequence

Mmu-Mir-542_3p

mirBase accession

MIMAT0003172

Sequence

38- UGUGACAGAUUGAUAACUGAAAG -61

Get sequence

Proposed targets

microrna.org: MIMAT0003172
TargetScanVert: mmu-miR-542-3p
miRDB: MIMAT0003172