MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-542

Family name MIR-542 (all species)
Seed GUGACAG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-542
Paralogues
Orthologues Bta-Mir-542  Cfa-Mir-542-v1  Cfa-Mir-542-v2  Cja-Mir-542  Dno-Mir-542-v1  Dno-Mir-542-v2  Eca-Mir-542-v1  Eca-Mir-542-v2  Ete-Mir-542  Hsa-Mir-542-v1  Hsa-Mir-542-v2  Laf-Mir-542  Mml-Mir-542-v1  Mml-Mir-542-v2  Mmr-Mir-542-v1  Mmr-Mir-542-v2  Mmu-Mir-542  Ocu-Mir-542-v1  Ocu-Mir-542-v2  Pab-Mir-542  Rno-Mir-542-P1a  Rno-Mir-542-P1b  Rno-Mir-542-P1c 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_128: 2874159-2874217 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-542)		 Mir-450-P3 scaffold_128: 2872948-2873006 [-] UCSC
Mir-450-P2 scaffold_128: 2873103-2873159 [-] UCSC
Mir-450-P1 scaffold_128: 2873272-2873328 [-] UCSC
Mir-542 scaffold_128: 2874159-2874217 [-] UCSC
Mir-15-P2c scaffold_128: 2878959-2879021 [-] UCSC
Mir-15-P1c scaffold_128: 2879319-2879377 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UGGGUCAAGAAUGCAAAGACCUCAGACGUUUCGGGGAUCAUCAUGUCACCAGAUACCAUUGUGCGCUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAGCCACUCAUCUUCACAGCCAU
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Structure
        10        20          30        40        50         
UGGGUCAAGAAUGCAAAGAC--|      G      GG    UCA      C  AUACCA 
                      CUCAGAC UUUCGG  AUCA   UGUCAC AG      \
                      GGGUCUG AAAGUC  UAGU   ACAGUG UC      U
UACCGACACUUCUACUCACCGA^      G      AA    UAG      U  GCGUGU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-542_5p*
mirBase accessionMIMAT0047341
Sequence 
0- UCGGGGAUCAUCAUGUCACCAG -22
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Mature sequence

Cpo-Mir-542_3p
mirBase accessionMIMAT0047342
Sequence 
37- UGUGACAGAUUGAUAACUGAAA -59
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